BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05030.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895579 jgi|Araly1|895579|Al_scaffold_0006_3575                    355    1e-97


> Ahg895579 jgi|Araly1|895579|Al_scaffold_0006_3575
Length=216

 Score =  355 bits (192),  Expect = 1e-97
 Identities = 209/217 (96%), Gaps = 2/217 (1%)
 Strand=Plus/Plus

Query  118  ATGTCGGTAAGTATGAGGTGCGACAAATGTCGTTCAGAAGCCCTCAAGATCGGAGCCAAA  177
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct  1    ATGTCGGTAAGTATGAGGTGCGAAAAATGTCGATCAGAAGCTCTCAAGATCGGAGCCAAA  60

Query  178  ACCACTGGAGTGACGTTT-GTGGGAATAGAAGGAGAAGAGAAAGACAAAGTGGTGGTGAT  236
            || ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACTACTGGGGTGAC-TTTCGTGGGAATAGAAGGAGAAGAGAAAGACAAAGTGGTGGTGAT  119

Query  237  CGGAGAAGGTGTCGACGCCGCATGTTTAGTTGTCCGGCTTCGCAAGAAAGTTGGTTTCGC  296
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CGGAGAAGGTGTCGACGCTGCATGTTTAGTTGTCCGGCTTCGCAAGAAAGTTGGTTTCGC  179

Query  297  TGATATTATCAGCGTCACAGATGTTGACGACACTTAA  333
            |||||||||||||||||||||||||||||||||||||
Sbjct  180  TGATATTATCAGCGTCACAGATGTTGACGACACTTAA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5