BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05060.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1 1546 0.0
Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1 1343 0.0
Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1 505 4e-142
> Ahg490178 jgi|Araly1|490178|fgenesh2_kg.6__3312__AT4G05060.1
Length=1061
Score = 1546 bits (837), Expect = 0.0
Identities = 1009/1086 (93%), Gaps = 36/1086 (3%)
Strand=Plus/Plus
Query 113 AACCCAATCAAATCCACTTTAATCCTTCCCTCTCTCGCGTCCGATTCTCCGATGGCTTTA 172
||| ||||||||||||||||||||||| || | ||| | ||||||||||||||||| |||
Sbjct 4 AACACAATCAAATCCACTTTAATCCTT-CC-C-CTCACATCCGATTCTCCGATGGCATTA 60
Query 173 ACGGAGGACAAATCAGATTCCGATGGTCGACGTTGGGGCAAATTCAAACTTCCATTTCGA 232
|||||||| ||||| | |||||||||||| ||| ||||||||||||| || || ||||||
Sbjct 61 ACGGAGGAAAAATCCGGTTCCGATGGTCGCCGTCGGGGCAAATTCAAGCTCCCCTTTCGA 120
Query 233 AACTCTAATTCCCAAGCT-CCTTCAGCCTCCT-CGTCCTCTTCCATGGCTA------CTT 284
||||| || | |||||| || ||| |||||| || ||||||||||||||| |||
Sbjct 121 AACTCCAACGCTCAAGCTACC-TCATCCTCCTCCG-CCTCTTCCATGGCTACTTCTTCTT 178
Query 285 CTTCTTCTTCTGTAACATCTTCTCATCTAAATCAAAATTACATTCATCAATCTCGCCATT 344
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 CTTCTTCTTCTGCAACATCTTCTCATCTCAATCAAAATTACATTCATCAATCTCGCCATT 238
Query 345 TTCAATATCACGGTCCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCGCCG 404
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 TCCAATATCACGGACCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCACCG 298
Query 405 CCACGATCCCTTCTATGTCATCTGTCGCGAGATCGCTTCTTCCAACAAAACGCCGATTAA 464
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 CCACGATCCCTTCCATGTCATCTGTCGCGAGATCACTTCTTCCAACAAAACGCCGATTAA 358
Query 465 AGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGGGAAGCAAGTCAGGAGTG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGGGAAGCAAGTCAGGAGTG 418
Query 525 CCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAAGTTTCAAACAACAGTAC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 CCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAAGTTTCAAACAACAGAAC 478
Query 585 CAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTGCTCCCGGGGAAGAAATTATCG 644
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 479 CAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTTCTCCTGGGGAAGAAATTATCG 538
Query 645 CAACTGTTTTCAAGTTTGTTGAGCCTCCTGAGAATAATGAAAAGCCAATGGAACAAAAGA 704
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 CAACCGTTTTTAAGTTTGTTGAGCCTCCTGAGAATAATGAAAAGCCGATGGAACAAAAGA 598
Query 705 GCGGGGTTAAGTTTAAAATCATGAGCTTGAAGATGAAAGTTCCAACAGACTATATGCCTG 764
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 599 GCGGGGTTAAGTTTAAAATCATGAGCCTGAAGATGAAAGTCCCAACAGACTATATGCCTG 658
Query 765 AGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGTAATGCGTGTGGTATTCT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGTAATGCGTGTGGTATTCT 718
Query 825 TGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAGTCAATTGGCTGAAGCGG 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAGTCAATTGGCTGAAGCGG 778
Query 885 ATGCTGCAGATGAAGCACGGAAAAAAGCATCAGAGGGTATTGTTGGTCCAAAGCCAATTG 944
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGCTGCAGATGAAGCACGGAAGAAAGCATCAGAGGGTATTGTTGGTCCAAAGCCAATTG 838
Query 945 GAGAAGGGCTTGTGATCGATGAATGGAAGCAACGCCGAGAGAGATATCTTGCACAACAAC 1004
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 839 GAGAAGGGCTTGTGATCGATGAATGGAAGCAACGACGAGAGAGATATCTTGCACAGCAAC 898
Query 1005 AAGGAGGAGTAGACGCTGCTTGAAACTTAAAGACCACCAAGACCAAAAAGTGTGTGTATG 1064
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 899 AAGGAGGAGTAGACGCGGCTTGAAAATAAAAGACCACCAAGACCAAAAAGTGTGTGTGTG 958
Query 1065 TGttttttttttttAATTTTGTGCCGAGTCAAAATGTGTTGTGTGACGAGATAGAAGATT 1124
|||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 959 TGTTTT--------------GTGCCCAGTCAAAATGTGTTGTGTGAGGAGATAGAAGATT 1004
Query 1125 GTATTTATGATCAATTATCTTAGTAATCCCAAAATTATTTGCAGAGGAGATCATCGTGTT 1184
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GTATTTATGATCA---------GTAATCCCAAAATTATTTGCAGAGGAGATCATCGTGTT 1055
Query 1185 TGGTAA 1190
||||||
Sbjct 1056 TGGTAA 1061
> Ahg490156 jgi|Araly1|490156|fgenesh2_kg.6__3290__AT4G05060.1
Length=1010
Score = 1343 bits (727), Expect = 0.0
Identities = 946/1043 (91%), Gaps = 49/1043 (5%)
Strand=Plus/Plus
Query 164 ATGGCTTTAACGGAGGACAAATCAGATTCCGATGGTCGACGTTGGGGCAAATTCAAACTT 223
||||| ||||||||||| ||||| | |||||||||||| ||| ||||||||||||| ||
Sbjct 1 ATGGCATTAACGGAGGAAAAATCCGGTTCCGATGGTCGCCGTCGGGGCAAATTCAAGCTC 60
Query 224 CCATTTCGAAACTCTAATTCCCAAGCT-CCTTCAGCCTCCT-CGTCCTCTTCCATGGCTA 281
|| ||||||||||| || | |||||| || ||| |||||| || |||||||||||||||
Sbjct 61 CCCTTTCGAAACTCCAACGCTCAAGCTACC-TCATCCTCCTCCG-CCTCTTCCATGGCTA 118
Query 282 CTTCTTCTTCTTCTGTAACATCTTCTCATCTAAATCAAAATTACATTCATCAATCTCGCC 341
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 ------CTTCTTCTGCAACATCTTCTCATCTCAATCAAAATTACATTCATCAATCTCGCC 172
Query 342 ATTTTCAATATCACGGTCCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAATCCG 401
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 173 ATTTCCAATATCACGGACCTCCTGTCGTCGAAGGATTGGGTCAAAACCATCATCAA-CCA 231
Query 402 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCGCTTCTTCCA-A-CA---AAACG 456
||||||||||||||||||||||||||||||||||||| |||| | | | || |
Sbjct 232 CCGCCACGATCCCTTCTATGTCATCTGTCGCGAGATCACTTC-GCGAGATCACTTCTTCC 290
Query 457 CC--GA---TT----AAAGCTTGATCCTTCAGCAAAACTTTACTTCCCTTATGAGCCTGG 507
|| || || ||| ||| |||||||||| ||||| ||| ||||||||||||||||
Sbjct 291 CCTTGATCCTTCAGCAAAACTTTATCCTTCAGCCAAACTCTACCTCCCTTATGAGCCTGG 350
Query 508 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACATGTAGCGTTTAA 410
Query 568 GTTTCAAACAACAGTACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTGCTCC 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 GTTTCAAACAACAGAACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGCTATTCTTTCTCC 470
Query 628 CGGGGAAGAAATTATCGCAACTGTTTTCAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 687
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 471 TGGGGAAGAAATTATCGCAACCGTTTTTAAGTTTGTTGAGCCTCCTGAGAATAATGAAAA 530
Query 688 GCCAATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCTTGAAGATGAAAGTTCC 747
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 531 GCCGATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCCTGAAGATGAAAGTCCC 590
Query 748 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTCTCTGAGGAGCAAGT 650
Query 808 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCATGATGGAGAAATTGAAGAG 710
Query 868 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAAAAAGCATCAGAGGGTATTGT 927
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 711 TCAATTGGCTGAAGCGGATGCTGCAGATGAAGCACGGAAGAAAGCATCAGAGGGTATTGT 770
Query 928 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGCCGAGAGAG 987
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 771 TGGTCCAAAGCCAATTGGAGAAGGGCTTGTGATCGATGAATGGAAGCAACGACGAGAGAG 830
Query 988 ATATCTTGCACAACAACAAGGAGGAGTAGACGCTGCTTGAAACTTAAAGACCACCAAGAC 1047
|||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 831 ATATCTTGCACAGCAACAAGGAGGAGTAGACGCGGCTTGAAAATAAAAGACCACCAAGAC 890
Query 1048 CAAAAAGTGTGTGTATGTGttttttttttttAATTTTGTGCCGAGTCAAAATGTGTTGTG 1107
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 891 CAAAAAGTGTGTGTGTGTGTTTT--------------GTGCCCAGTCAAAATGTGTTGTG 936
Query 1108 TGACGAGATAGAAGATTGTATTTATGATCAATTATCTTAGTAATCCCAAAATTATTTGCA 1167
||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 937 TGAGGAGATAGAAGATTGTATTTATGATCA---------GTAATCCCAAAATTATTTGCA 987
Query 1168 GAGGAGATCATCGTGTTTGGTAA 1190
|||||||||||||||||||||||
Sbjct 988 GAGGAGATCATCGTGTTTGGTAA 1010
> Ahg492738 jgi|Araly1|492738|fgenesh2_kg.7__2171__AT4G21450.1
Length=1259
Score = 505 bits (273), Expect = 4e-142
Identities = 482/581 (83%), Gaps = 21/581 (4%)
Strand=Plus/Plus
Query 437 TCGCTTCTTCCAACAAAACGCCGATTAAAGCTTGATCCTTCAGCA-AAACTTTACTTCCC 495
||| ||||||| || ||||| |||| |||||||||||||| | | ||||| || || ||
Sbjct 453 TCGTTTCTTCCTACTAAACGAAGATTGAAGCTTGATCCTTCTG-AGAAACTCTATTTTCC 511
Query 496 TTATGAGCCTGGGAAGCAAGTCAGGAGTGCCATTAAGATTAAGAATACGAGCAAGTCACA 555
||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||| |||||
Sbjct 512 TTATGAGCCTGGGAAGCAAGTAAGGAGCGCTATTAAGATTAAAAATACCAGCAAATCACA 571
Query 556 TGTAGCGTTTAAGTTTCAAACAACAGTACCAAAGAGTTGCTTCATGCGCCCGGCTGGTGC 615
|||||| || |||||||||||||| | ||| ||||||||||||||||| || |||||||
Sbjct 572 TGTAGCCTTCAAGTTTCAAACAACTGCACCGAAGAGTTGCTTCATGCGTCCACCTGGTGC 631
Query 616 TATTCTTGCTCCCGGGGAAGA-AATTATCGCAACTGTTTTCAAGTTTGTTGAGCCTCCTG 674
|||||||||||| || | ||| ||||| || ||||| ||||| ||||||||||||||||
Sbjct 632 TATTCTTGCTCCTGGAG-AGACTATTATTGCTACTGTGTTCAAATTTGTTGAGCCTCCTG 690
Query 675 AGAATAATGAAAAGCCAATGGAACAAAAGAGCGGGGTTAAGTTTAAAATCATGAGCTTG- 733
|||||||||| ||||||||||| |||| |||| | ||||| ||||||||||||||| ||
Sbjct 691 AGAATAATGAGAAGCCAATGGATCAAAGGAGCAGAGTTAAATTTAAAATCATGAGCCTGA 750
Query 734 AAGATGAAAGTTCCAACAGACTATATGCCTGAGCTGTTTGAGGAGCAAAAAGATCATGTC 793
||| |||||| ||||| |||||| |||||||||||||||| |||||||| ||| ||||
Sbjct 751 AAG-TGAAAGGTCCAATGGACTATGTGCCTGAGCTGTTTGATGAGCAAAAGGATGATGTG 809
Query 794 TCTGAGGAGCAAGTAATGCGTGTGGTATTCTTGGATCCCGAAAACCCTAACTCCAT--GA 851
||| | |||||| || |||||||| | ||| |||||||||| ||| ||| || | |
Sbjct 810 TCTAAAGAGCAAATATTGCGTGTGATTTTCCTGGATCCCGAGCGCCCCAAC-CC-TGCGC 867
Query 852 TGGAGAAATTGAAGAGTCAATTGGCTGAAGCGGATGCTGCAGAT-GAAGCACGGAAA-AA 909
|||| ||| ||||| | || || || ||||||||||| || | | || |||| |||| ||
Sbjct 868 TGGACAAACTGAAGCGCCAGTTAGCAGAAGCGGATGCAGC-GGTGGAGGCAC-GAAAGAA 925
Query 910 AGCAT-CAGAGGGTATTGTTGGTCCAAAG-CCAATTGGAGAAGGGCTTGTGATCGATGAA 967
| | | |||| || | ||||||||| | |||||||||||||||||||||||||||
Sbjct 926 A-CCTCCAGA-GG-A-AACAGGTCCAAAGATC-ATTGGAGAAGGGCTTGTGATCGATGAA 980
Query 968 TGGAAGCAACGCCGAGAGAGATATCTTGCACAACAACAAGG 1008
|||||| | || |||||||||||||||||||| ||||||||
Sbjct 981 TGGAAGGAGCGTCGAGAGAGATATCTTGCACAGCAACAAGG 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5