BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05070.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490157 jgi|Araly1|490157|fgenesh2_kg.6__3291__AT4G05070.1         695    0.0  


> Ahg490157 jgi|Araly1|490157|fgenesh2_kg.6__3291__AT4G05070.1
Length=530

 Score =  695 bits (376),  Expect = 0.0
 Identities = 488/538 (91%), Gaps = 24/538 (4%)
 Strand=Plus/Plus

Query  1    CTCTCTTCGGAATCTGAAAAGCCATAAATCAGCAGaaaaaaaTCTTAAGGATCGGAAATT  60
            ||||||||||||||||||||||||| ||| || || ||||||||| ||| ||| ||||||
Sbjct  1    CTCTCTTCGGAATCTGAAAAGCCAT-AATTAGTAG-AAAAAATCTAAAGAATC-GAAATT  57

Query  61   T-TATAATCGGATGAATAGAGTGATTAGTCAGTTTTCCGGTAAGTTGATGAAGGAGAAGA  119
            | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  58   TATAAAATCGGATGAATAGAGTGATTAATCAGTTTTCCGGTAAGTTGATGAAGGAGAAGA  117

Query  120  GTGTTACCGG-TGTAAGCGGCGGAGAT------ACGACTTTAAGATCTGCCGTCAAAGAA  172
            ||||||||||  || ||||||||||||      |||||||||||||||||||||||||||
Sbjct  118  GTGTTACCGGAAGT-AGCGGCGGAGATACGACGACGACTTTAAGATCTGCCGTCAAAGAA  176

Query  173  TCGGTCTCGTCTCCACAGAGTGcgtcgtcgtcgtcgtcgGTGAGGAGGCTTAAAGGAGAT  232
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  TCGGTCTCGTCGCCGCAGAGTGCGTCGTCGTCGTCGTCGGTGAGGAGGCTTAAAGGAGAT  236

Query  233  CTGGAATCGAGTCGATTTGGTGCGGCGGCGAGTGAGAGGCTGAGGCAAGCGGAGGAATCT  292
            |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  237  CTGGAATCGAGTCGATTTGGTGCGGCGGCGAGTGAGAGGCTGAGACAGGCGGAGGAGTCT  296

Query  293  TTGAGGACGGTGATGTTTCTGAGCTGTTGGGGATCTTGTTAGATCTGGTTGAGAAAATAA  352
            |||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  297  TTGAGGACTGTTATGTTTCTGAGCTGTTGGGGATCTTGTTAGATCTGGTTAAGACAATAA  356

Query  353  TAGATGAGAAAACGAAACCAAAAC-gtttct-gtttgtgtttttgagttttggatttttg  410
            ||||  |||||||||||| ||||| |||| | ||||||||| | |||||| |||||||| 
Sbjct  357  TAGAAAAGAAAACGAAACGAAAACAGTTTGTTGTTTGTGTTGT-GAGTTT-GGATTTTTC  414

Query  411  ttttctctgtgaatagttttttttttt--tttCGTTT-T-CTTTGT--ACTTTGTGTTTT  464
            |||||| ||||||||| ||||||||||  |||| ||| | ||||||  | || |||||||
Sbjct  415  TTTTCTTTGTGAATAGCTTTTTTTTTTCGTTTC-TTTGTACTTTGTGTAATT-GTGTTTT  472

Query  465  ATGTAAATCATGTATAAAATGAAAAGTAAATCAATGAAGATAATGGTTTGTCTTCACC  522
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  473  ATGTAAATCATGTATAAAATGAAAAGTAAATCGATGAAGATAATGGTTTGTCTTCACC  530



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5