BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05080.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 375 3e-103
Ahg929896 jgi|Araly1|929896|scaffold_302353.1 250 2e-65
Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772 204 1e-51
Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001 200 2e-50
> Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1
Length=1035
Score = 375 bits (203), Expect = 3e-103
Identities = 507/643 (79%), Gaps = 64/643 (10%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTTCGATCTTACGCAGGATTTGGTGA-AAGAGATATTGTCTAGGGTTCC 59
||||||| |||||| |||||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATGACGACGATGTTTGATCTTTCGCAGGATTTGGT-AGAGGAGATATTGTCTAGGGTTCC 59
Query 60 GATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTT-ATCCAAAG 118
||||||||| || ||||||||||||||||||||||||| |||||||| ||| ||| |||
Sbjct 60 GATAACTTCTCTTGGAGCAGTGAGATCCACTTGCAAAGCATGGAACG-TTTGATCTAAAA 118
Query 119 ATCGGATTCTATGTAAAGCAAAACCAAA-ACAGCAGTTTCATCAAGGGTTCATGCTG-TC 176
|||||||| ||||||| |||||||||| | | ||||||| | | ||||||||| || |
Sbjct 119 ATCGGATTTTATGTAATGCAAAACCAAGGA-ATCAGTTTC-T-A-GGGTTCATGATGATG 174
Query 177 TGAT-TA-TAGGCTTCGTTCAATGAGGTTCAATATCTC-TGGAAC-CTTCAAGGAA-A-A 230
| | || ||||||| ||||||| ||||| ||| || | ||||| || ||| ||| | |
Sbjct 175 GGTTATACTAGGCTTTGTTCAATTAGGTTTAATCTC-CATGGAATACT-CAACGAAGACA 232
Query 231 TGGTGAAGAATTCGTTAA-CTTATCAGTAAAGGAGATTGGTAATTTTCTTAATAAAGTTG 289
|| |||||||||||| | | |||| |||||||||| |||||||| ||||| ||| |
Sbjct 233 -GG-GAAGAATTCGTTGATCC-ATCAATAAAGGAGATAGGTAATTTACTTAACCAAG--G 287
Query 290 AGATATC-TCATATGTA-T-T---ACTGCGGCGG-T-ATA-TTGTTATGTGTCACCACGG 340
||||||| | ||||| | | | | || | || | || |||||||| || ||| ||
Sbjct 288 AGATATCAT-ATATGAAGTCTTGTATTGTGATGGCTTATTGTTGTTATGCGTGGCCAAGG 346
Query 341 AT---A-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAGGTGGATCCAAC 394
| | | |||||| || |||||||||| ||||| || |||| ||| ||||||||||
Sbjct 347 AGCGCAACACTAGGCTTTTGGTTTGGAACCCATATTTAGGACAAACCAGATGGATCCAAC 406
Query 395 TCAAAACAGAAACTATGTATTCCACGT---T-T-TG-TCTCAGATATGACAACAACAAAA 448
|||||| | ||| | | | |||| | | | || | | |||||||||||||| | |
Sbjct 407 CCAAAACCGCAACGA-GAA--CCACATGCATGTATGCTTTGGGATATGACAACAACCAGA 463
Query 449 ACCACAAGATATTGA-GGTTTCTCGATAATAAACAGGGCT-CATACGAAATTTACGATTT 506
||||||||||||||| ||||| ||||||| ||||||| | |||||||||||||||||
Sbjct 464 ACCACAAGATATTGAAGGTTT-TCGATAAC---CAGGGCTAC-TACGAAATTTACGATTT 518
Query 507 GAAGTCTTATTCATGGAGGGCTTTTGATGTCATTCCCAAGTGGGATATAGATGAT-GATG 565
|||| | |||||||||||||||||| || ||||||||| ||||| |||||| | | |
Sbjct 519 TAAGTATAATTCATGGAGGGCTTTTGTTGACATTCCCAATTGGGAAATAGATTTTTG-TC 577
Query 566 GGCAGAGTGCA--TCGGTAAA-GGGAAATACTTACTTTAGGAC 605
||| ||| ||| |||||||| ||||| |||||||||| ||||
Sbjct 578 GGC-GAG-GCACATCGGTAAACGGGAA-TACTTACTTTTGGAC 617
> Ahg929896 jgi|Araly1|929896|scaffold_302353.1
Length=229
Score = 250 bits (135), Expect = 2e-65
Identities = 187/211 (89%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTTCGATCTTACGCAGGATTTGGTGA-AAGAGATATTGTCTAGGGTTCC 59
|||||||||||| ||||||||||||||||||||| | | |||||| ||| |||||||||
Sbjct 21 ATGACGATGATGAGCGATCTTACGCAGGATTTGGT-AGAGGAGATACTGTGTAGGGTTCC 79
Query 60 GATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAAAGA 119
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 80 TATAACTTCTCTAGGAGCAGTGAGATCTACTTGCAAAGGATGGAACGCTTTATCCAAAGA 139
Query 120 TCGGATTCTATGTAAAGCAAAACCAAAACAGCAGTTTC-A-T--CAAGGGTTCATGCTGT 175
||||||||||||| || | |||||||||| ||||||| | | | |||||||||| |||
Sbjct 140 ACGGATTCTATGTATAGGAGAACCAAAACAACAGTTTCTACTTTCTAGGGTTCATGTTGT 199
Query 176 CTG-ATTATAGGCTTCGTTCAATGAGGTTCA 205
|| ||||||||||| |||||||||||||||
Sbjct 200 -TGGATTATAGGCTTTGTTCAATGAGGTTCA 229
> Ahg318756 jgi|Araly1|318756|fgenesh1_pm.C_scaffold_3001772
Length=1146
Score = 204 bits (110), Expect = 1e-51
Identities = 319/412 (77%), Gaps = 46/412 (11%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTTC-GATCTTACGC-AGG-ATTTGGTGAAAG-AGATATTGTCTAGGGT 56
||||||| ||| || |||||| | | ||| ||||||| | | |||||||||||| |||
Sbjct 1 ATGACGACGAT-CTCTGATCTT-C-CAAGGAATTTGGT-AGGGAAGATATTGTCTATGGT 56
Query 57 TCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAA 116
||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 57 TCCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAA 116
Query 117 AGATCGGATTCTATGTAAAGCA-AAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGT 175
|| |||||||||||||||||| |||| || || |||||| | ||||||||| ||
Sbjct 117 AGTTCGGATTCTATGTAAAGCCGAAAC-AAGGCATCAGTTTG-TG--GGGTTCATGATGA 172
Query 176 CTGAT-TATAGGCTTCGTTCAATGAG-G-TTCAAT-A-TCT-C-TGGAACCTTCAAGGAA 228
|| |||| |||| ||||| |||| | || | | ||| | |||||||||||| |||
Sbjct 173 A-GAAGTATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAA 231
Query 229 -AATG-G-TGAA-GAATTCGT-TAACTTATC-AGTAAAGGAGATT-GGTAATTT-TCTTA 280
|| | | | || |||||||| || | ||| | |||||||| || |||||||| | |||
Sbjct 232 GAAGGAGCT-AACGAATTCGTGTATCC-ATCTA-TAAAGGAG-TTAGGTAATTTAT-TTA 286
Query 281 ATAAAGTTGAGATATCTCATATGTATTAC--TGCGGCGG-TATATTGTTATGTGTCACCA 337
|| |||| |||||||| | | || || | |||| ||| | |||||||||| | ||||
Sbjct 287 ATCAAGTCAAGATATCT-AGA-GTTTTTCAATGCGACGGGT-TATTGTTATGCATGACCA 343
Query 338 C-G-G-ATA-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAG 383
| | | | | |||||||||| | |||||||| |||||||| ||||||||
Sbjct 344 AAGAGGACAACACTAGGCTCGTGGTATGGAACCCTTATTTGGGTCAAATCAG 395
> Ahg333266 jgi|Araly1|333266|fgenesh1_pm.C_scaffold_275000001
Length=1068
Score = 200 bits (108), Expect = 2e-50
Identities = 318/411 (77%), Gaps = 47/411 (11%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTTC-GATCTTACGC-AGG-ATTTGGTGAAAG-AGATATTGTCTAGGGT 56
||||||| ||| || |||||| | | ||| ||||||| | | |||||||||||| |||
Sbjct 1 ATGACGACGAT-CTCTGATCTT-C-CAAGGAATTTGGT-AGGGAAGATATTGTCTATGGT 56
Query 57 TCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAA 116
||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 57 TCCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAA 116
Query 117 AGATCGGATTCTATGTAAAGCA-AAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGT 175
|| |||||||||||||||||| |||| || || |||||| | ||||||||| ||
Sbjct 117 AGTTCGGATTCTATGTAAAGCCGAAAC-AAGGCATCAGTTTG-TG--GGGTTCATGATGA 172
Query 176 CTGAT-TATAGGCTTCGTTCA-A---TGAGGTTCAATATCTC-TGGAACCTTCAAGGAA- 228
|| |||| |||| ||||| | | | |||||| | || |||||||||||| |||
Sbjct 173 A-GAAGTATAAGCTTTGTTCACAAACTTTG-TTCAATCT-TCATGGAACCTTCAACGAAG 229
Query 229 AATG-G-TGAA-GAATTCGT-TAACTTATC-AGTAAAGGAGATT-GGTAATTT-TCTTAA 281
|| | | | || |||||||| || | ||| | |||||||| || |||||||| | ||||
Sbjct 230 AAGGAGCT-AACGAATTCGTGTATCC-ATCTA-TAAAGGAG-TTAGGTAATTTAT-TTAA 284
Query 282 TAAAGTTGAGATATCTCATATGTATTAC--TGCGGCGG-TATATTGTTATGTGTCACCAC 338
| |||| |||||||| | | || || | |||| ||| | |||||||||| | ||||
Sbjct 285 TCAAGTCAAGATATCT-AGA-GTTTTTCAATGCGACGGGT-TATTGTTATGCATGACCAA 341
Query 339 -G-G-ATA-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAG 383
| | | | | |||||||||| | |||||||| |||||||| ||||||||
Sbjct 342 AGAGGACAACACTAGGCTCGTGGTATGGAACCCTTATTTGGGTCAAATCAG 392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5