BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05100.1
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895588 jgi|Araly1|895588|Al_scaffold_0006_3584 1352 0.0
Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1 84.2 2e-15
> Ahg895588 jgi|Araly1|895588|Al_scaffold_0006_3584
Length=1029
Score = 1352 bits (732), Expect = 0.0
Identities = 943/1038 (91%), Gaps = 42/1038 (4%)
Strand=Plus/Plus
Query 104 ATGGGACGATCACCATGTTGTGAGAAGAAGAATGGTCTCAAGAAAGGACCATGGACTCCT 163
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAGAAGAAGAATGGTCTCAAGAAAGGACCATGGACTCCT 60
Query 164 GAGGAGGATCAAAAGCTCATTGATTATATCAATATACATGGTTATGGAAATTGGAGAACT 223
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GAGGAAGATCAAAAGCTCATTGATTATATCAATAAACATGGTTATGGAAATTGGAGAACT 120
Query 224 CTTCCCAAGAATGCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGGTGGACCAAC 283
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTTCCAAAGAATGCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGATGGACCAAC 180
Query 284 TATCTCCGACCAGATATTAAGCGTGGAAGATTCTCTTTTGAAGAAGAAGAAACCATTATT 343
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 181 TATCTCCGACCAGATATTAAGCGTGGACGATTCTCTTTCGAAGAAGAAGAAACCATTATT 240
Query 344 CAACTTCACAGCATCATGGGAAACAAGTGGTCTGCGATTGCGGCTCGTTTGCCTGGAAGA 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 241 CAACTTCACAGCATCATGGGAAACAAGTGGTCTGCTATTGCGGCTCGTTTGCCAGGAAGA 300
Query 404 ACAGACAACGAGATCAAAAACTATTGGAACACTCACATCAGAAAAAGACTTCTAAAGATG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAGACAACGAGATCAAAAACTATTGGAACACTCACATCAGAAAAAGACTTCTAAAGATG 360
Query 464 GGAATCGACCCGGTTACACACACTCCACGTCTTGATCTTCTCGATATCTCCTCCATTCTC 523
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGAATCGACCCGGTAACACACACTCCACGTCTTGATCTTCTTGATATCTCCTCCATTCTC 420
Query 524 AGCTCATCTATCTACAACTCTTCGcatcatcatcatcatcatcatcaACAACATATGAAC 583
||||||||||||||||||||| ||||||||||||||||||| | || |||||||
Sbjct 421 AGCTCATCTATCTACAACTCTACGCATCATCATCATCATCA--A-CA------TATGAAC 471
Query 584 ATGTCGAGGCTCATGATGAGTGATGGTAATCATCAACCATTGGTTAACCCCGAGATACTC 643
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 472 ATGTCGAGGCTAATGATGGGTGATGGTCATCATCAACCATTGGTTAACCCCGAGATACTC 531
Query 644 AAACTCGCAACCTCTCTCTTTTCAAACCAAAACCACCCCAACAACACACACGAGAACAAC 703
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
Sbjct 532 AAACTCGCAACCTCTCTCTTTTCAAACCAAACCCATCCCAACAAAACACACGAGAACCAT 591
Query 704 ACGGTTAACCAAACCGAAGTAAACCAATACCAAACCGGTTACAACATGCCTGGTAATGAA 763
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 592 ACGGTTAACCAAACCGAAGTAAAACAATACCAAACCGGTTACAACATGACTGGTAATCAA 651
Query 764 GAATTACAATCTTGGTTCCCTATCATGGATCAATTCACGAATTTCCAAGACCTCATGCCA 823
|||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||
Sbjct 652 GAATTACAATCTTGGTTCCCTATCATGGATCAGTTCGCGGAGTTCCAAGACCTCATGCCA 711
Query 824 ATGAAGACGACGGTCCAAAATTCATTG--T-C------AT-A--C---GATGATGATTGT 868
||||| |||||||||||| ||||| || | | || | | || || || | |
Sbjct 712 ATGAAAACGACGGTCCAAGATTCACTGCCTTCTTTCCCATCAAACCACGAAGACGAGTAT 771
Query 869 TCGAAGTCCAATTTTGTATTAGAACCTTATTACTCCGACTTTGCTTCAGTCTTGACCACA 928
|| ||||| || | ||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 772 TCCAAGTCTAACTCTGTATTAGAACCTTATTACTCGGACTTTGCCTCGGTCTTGACCACA 831
Query 929 CCTTCTTCAAGCCCGACTCCGTTAAACTCAAGTTCCTCAACTTACATCAATAGTAGCACT 988
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 832 CCTTCTTCAAGCCCGACTCCATTGAACTCAAGTTCCACAACTTACATCAATAGTAGCACT 891
Query 989 TGCAGCACCGAGGATGAAAAAGAGAGTTATTACAGTGATAAT---ATCA---CT-A--A- 1038
|||||||||||||||||||||||||||||||||||| ||||| || | || | |
Sbjct 892 TGCAGCACCGAGGATGAAAAAGAGAGTTATTACAGTAATAATGTTATGAGTACTTATGAA 951
Query 1039 -TT----ATT---CGTTTGATGTTAATGGTTTTCTCCAATTCCAATAAACAAAACGCCAT 1090
|| ||| ||||||||||| |||||||||| ||||||||| |||||||| | ||
Sbjct 952 ATTGCTGATTATTCGTTTGATGTTGATGGTTTTCTGCAATTCCAAGAAACAAAAAACAAT 1011
Query 1091 TGGAATAGAGTTATGTAA 1108
||| ||||||||||||||
Sbjct 1012 TGGGATAGAGTTATGTAA 1029
> Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1
Length=1352
Score = 84.2 bits (45), Expect = 2e-15
Identities = 215/293 (73%), Gaps = 28/293 (10%)
Strand=Plus/Plus
Query 155 TGGACTCCTGAGGAGGATCA-AAAGC-TCATTGATTATATCAATATACATGGTTATGGAA 212
||| |||| ||||| ||| | ||| | || | ||||||||| || ||||||| ||||
Sbjct 171 TGGTCTCCCGAGGAAGATGAGAAA-CTTC-TCAATTATATCACTAGACATGGTCATGGCT 228
Query 213 ATTGGAGAACTCT-TCCC-AAGAAT-GCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTC 269
|||||| ||| |||| || | | || || || ||||||||||| ||||||||| | |
Sbjct 229 GTTGGAG--TTCTGTCCCTAA-ACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGAC 285
Query 270 TCCGGTGGACCAACTATCTCCGACCAGATATT-AAGCGTGGAAGATTCTCTTTTG-AAGA 327
| | |||| || ||| | |||||||| || ||| | || || || || | | ||||
Sbjct 286 TTAGATGGATAAATTATTTGAGACCAGAT-TTAAAGAGAGG-AGCTT-TC--TCGCAAGA 340
Query 328 AGAAGAAA-C--CATTATTCAACTTCACA-GCAT-CA-TGGGAAACAAGTGGTCTGC-GA 380
||||||| | || ||| | | || || || | || | || |||| ||||||| | |
Sbjct 341 CGAAGAAAGCTTAATCATTGAGC-TC-CATGC-TGCATTAGGCAACAGGTGGTCT-CAAA 396
Query 381 TTGCGGCTCGTTTGCCTGGAAGAACAGACAACGAGATCAAAAACTATTGGAAC 433
| || | || || || |||||||||||||||||||||||||||| |||||||
Sbjct 397 TCGCAACGCGGTTACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAAC 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43841354550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5