BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05120.1
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490161 jgi|Araly1|490161|fgenesh2_kg.6__3295__AT4G05110.1 1977 0.0
Ahg943294 jgi|Araly1|943294|scaffold_603838.1 1921 0.0
Ahg943295 jgi|Araly1|943295|scaffold_603839.1 1461 0.0
> Ahg490161 jgi|Araly1|490161|fgenesh2_kg.6__3295__AT4G05110.1
Length=1368
Score = 1977 bits (1070), Expect = 0.0
Identities = 1237/1318 (94%), Gaps = 10/1318 (1%)
Strand=Plus/Plus
Query 81 AATGGCGGATAGATATGAGAACCAACCTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAAT 140
||||||||||| ||| | | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 56 AATGGCGGATATATACGGGCACCAAACTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAAT 115
Query 141 GGTTGTTTGCTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTCACTAT 200
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 116 GGTTGTTTACTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTTAGTAT 175
Query 201 AGCAGATTACTACTACAAAGTTTTTCCGGATTATCATCCTTCAAGGGTACTCACACTTGT 260
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 AGCAGATTACTACTACCAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTCACACTTGT 235
Query 261 ATACCAACCGTTTGCGCTTGGAACAATCTTGATTCTCGCATACCACGAATCGAAAATCAA 320
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 ATACCAACCGTTTGCGCTTGGAACAATCGTGATTCTCGCATACCACGAATCGAAAATCAA 295
Query 321 TACTCGAAAACGTAACCTCATTGGTTACATTCTATTCACAATATCCACATTCTTGCTCAT 380
|||||| ||||||||||| || ||||||||||||| ||||||||||||||||| |||||
Sbjct 296 TACTCGGAAACGTAACCTGATCGGTTACATTCTATACACAATATCCACATTCTCACTCAT 355
Query 381 AGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGTCCTTATATCGGTTTATGCGC 440
||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 356 AGTTTTGGATTCGGCAACAAAAGGACGTGGTGGAATCGGACCTTATATTGGTTTATGCGC 415
Query 441 TGTTGTTGCTTCTTTTGGCCTCGCGGATGCTACAGTTCAAGGAGGAATGATCGGTGATTT 500
|| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 416 AGTCGTTGCTTCTTTCGGCCTCGCGGATGCTACCGTTCAAGGAGGAATGATAGGTGATTT 475
Query 501 ATCATTGATGTGCCCTGAACTAGTTCAGTCATTCATGGGAGGTTTGGCTGTATCTGGTGC 560
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 476 ATCATTGATGTGCCCTGAACTAGTTCAGTCATTCATGGGAGGTTTAGCTGTAGCTGGTGC 535
Query 561 GCTAACATCAGCACTTCGGCTAATAACTAAAGCAGCCTTTGAGAAAACAAACGACGGTCC 620
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 536 GCTAACATCAGCACTTAGGCTAATAACTAAAGCAGCTTTTGAGAAAACAAACAACGGTCT 595
Query 621 ACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATGCATAGAGTTACTCTGTGTGTT 680
||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 596 ACGTAAAGGAGCAATGATGTTCTTAGCTATCTCCACATTCATAGATTTACTCTGTGTGAT 655
Query 681 TCTATATGCTTATGTGTTCCCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAAGCCGC 740
||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCTATACACGTATGTGTTACCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAAGCCGC 715
Query 741 TTCTGAAGGATCCAAAACTGTTTCTGCTGATCTTGCTGCTGCTGGTATCCAAAATCAATC 800
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 TTCTGAAGGATCCAAAACTGTTTCTGCTGATCTTGCTGCCGCTGGTATCCAAAATCAATC 775
Query 801 AGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAA-GAGCTATTGATTC 859
|| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 776 AGGCTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAA-AAAGGAGCTGTTGATTC 834
Query 860 AAAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGCACGTTATCCATTTTCC 919
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 835 AAAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGTACATTATCTATTTTCC 894
Query 920 CGGGGTTTTTATATGAAAACACAGGACAACACGGGCTAGGCGATTGGTACGCACTTGTCT 979
||||||| || ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 895 CGGGGTTCTTGTATGAAAACACAGGACAACACGGGCTAGGCGCTTGGTATGCACTTGTCT 954
Query 980 TAGTAGCGATGTACAA-TTGTTGGGACTTGGTCGGGAGGTACACACCACTGGTGAAATGG 1038
||||||| |||||||| || |||||| ||||||||||||||||| || ||||||||||||
Sbjct 955 TAGTAGCTATGTACAACTT-TTGGGATTTGGTCGGGAGGTACACGCCGCTGGTGAAATGG 1013
Query 1039 CTCAAGATTGAGAATAGAAAGTTGATCACAA-TCGCGGTATTGTCACGTTATCTTCTCAT 1097
|||||||||||||||||||| || ||||||| | ||||| |||||||||||||| |||||
Sbjct 1014 CTCAAGATTGAGAATAGAAAATTAATCACAAGT-GCGGTTTTGTCACGTTATCTCCTCAT 1072
Query 1098 TCCGGCGTTCTACTTCACTGCGAAATATGGTGATCAGGGATGGATGATTATGCTCATTTC 1157
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 1073 TCCGGCGTTCTACTTCACTGCAAAATATGGTGATCAAGGATGGATGATTATGCTCGTTTC 1132
Query 1158 TGTTTTGGGGTTGACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAAGG 1217
| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CGCTTTGGGATTAACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAAGG 1192
Query 1218 ATACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTACTGGTGATATTTCTGTTAGGAGG 1277
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1193 ATACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTGCTGGTGATATTTCTGTTAGGAGG 1252
Query 1278 GATATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAATGCCTTTTG 1337
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GATATTTGCGGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAATGCCTTTTG 1312
Query 1338 AGTTTTAATCACTCCAAAAC-AGTGGTTCACTTTAAGTTA-ATTTGGAGGTTAAGTTG 1393
|||| ||||||||||||||| ||||| || ||||| |||| ||| ||||||||| |||
Sbjct 1313 AGTTCTAATCACTCCAAAACCAGTGGCTCGCTTTA-GTTACATT-GGAGGTTAATTTG 1368
> Ahg943294 jgi|Araly1|943294|scaffold_603838.1
Length=1298
Score = 1921 bits (1040), Expect = 0.0
Identities = 1199/1278 (94%), Gaps = 2/1278 (0%)
Strand=Plus/Plus
Query 81 AATGGCGGATAGATATGAGAACCAACCTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAAT 140
||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 21 AATGGCGGATAGATACGAGAACCAAGCTCCTGAGAAGCTCCAGGGGAAGTACCAAGCAAT 80
Query 141 GGTTGTTTGCTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTCACTAT 200
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 81 GGTTGTTTGCTGTATTCTTGGGATTGGATCTCTCGTTTCTTGGAACAGTATGCTTACTAT 140
Query 201 AGCAGATTACTACTACAAAGTTTTTCCGGATTATCATCCTTCAAGGGTACTCACACTTGT 260
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 141 AGCAGATCACTACTACAAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTTACACTTGT 200
Query 261 ATACCAACCGTTTGCGCTTGGAACAATCTTGATTCTCGCATACCACGAATCGAAAATCAA 320
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 201 ATACCAACCGTTTGCGCTTGGAACTATCGTGATTCTCGCATACCACGAATCGAAAATCAA 260
Query 321 TACTCGAAAACGTAACCTCATTGGTTACATTCTATTCACAATATCCACATTCTTGCTCAT 380
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 261 TACCCGAAAACGTAACCTGATTGGTTACATTCTATTCACGATATCCACATTCTTGCTCAT 320
Query 381 AGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGTCCTTATATCGGTTTATGCGC 440
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 321 AGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGACCTTATATTGGTTTATGCGC 380
Query 441 TGTTGTTGCTTCTTTTGGCCTCGCGGATGCTACAGTTCAAGGAGGAATGATCGGTGATTT 500
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 AGTCGTTGCTTCTTTTGGCCTCGCGGATGCTACCGTTCAAGGAGGAATGATCGGTGATTT 440
Query 501 ATCATTGATGTGCCCTGAACTAGTTCAGTCATTCATGGGAGGTTTGGCTGTATCTGGTGC 560
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 441 ATCATTGATGTGCCCTGAACTAGTTCAGTCATTCATGGGAGGATTGGCTGTAGCTGGTGC 500
Query 561 GCTAACATCAGCACTTCGGCTAATAACTAAAGCAGCCTTTGAGAAAACAAACGACGGTCC 620
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||
Sbjct 501 GCTAACATCAGCACTTAGGCTAATAACGAAAGCAGCTTTTGAGAAAAAAAACGACGGTTT 560
Query 621 ACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATGCATAGAGTTACTCTGTGTGTT 680
|||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||| |
Sbjct 561 ACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATTCATAGAATTCCTCTGCGTGAT 620
Query 681 TCTATATGCTTATGTGTTCCCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAAGCCGC 740
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 621 GGTATATGCTTATGTGTTCCCAAAACTCCCAATTGTTAAGTATTACCGAAGAAAAGCTGC 680
Query 741 TTCTGAAGGATCCAAAACTGTTTCTGCTGATCTTGCTGCTGCTGGTATCCAAAATCAATC 800
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 681 TTCTGAAGGATCCAAAACTGTTTCTGCTGATCTTGCTGCTGCTGGTATCCAGAATCAATC 740
Query 801 AGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAAGAGCTATTGATTCA 860
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 741 AGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAAGAGTTGTTGATACA 800
Query 861 AAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGCACGTTATCCATTTTCCC 920
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 801 AAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGTACATTATCCATTTTCCC 860
Query 921 GGGGTTTTTATATGAAAACACAGGACAACACGGGCTAGGCGATTGGTACGCACTTGTCTT 980
||||| || |||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 861 CGGGTTCTTGTATGAAAATACAGGACAACACGGGCTGGGCGCTTGGTACGCACTTGTCTT 920
Query 981 AGTAGCGATGTACAATTGTTGGGACTTGGTCGGGAGGTACACACCA-CTGGTGAAATGGC 1039
|||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||
Sbjct 921 AGTAGCGATGTACAATTGCTGGGATTTGGTAGGGAGGTACAC-GCAGCTGGTGAAATGGC 979
Query 1040 TCAAGATTGAGAATAGAAAGTTGATCACAATCGCGGTATTGTCACGTTATCTTCTCATTC 1099
||||||||||||||||||| |||||||||| || || || ||||||||||| |||||||
Sbjct 980 TCAAGATTGAGAATAGAAAACTGATCACAATTGCAGTTTTATCACGTTATCTCCTCATTC 1039
Query 1100 CGGCGTTCTACTTCACTGCGAAATATGGTGATCAGGGATGGATGATTATGCTCATTTCTG 1159
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1040 CGGCGTTCTACTTCACTGCGAAATATGGTGATCAAGGATGGATGATTATGCTTGTTTCTA 1099
Query 1160 TTTTGGGGTTGACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAAGGAT 1219
||||||| ||||||||||||||||||||||| |||||| | || | ||||||||| || |
Sbjct 1100 TTTTGGGATTGACTAATGGACATCTCACTGTGTGCATTCTCACCACAGCTCCTAATGGCT 1159
Query 1220 ACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTACTGGTGATATTTCTGTTAGGAGGGA 1279
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1160 ATAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTGCTGGTGATATTTCTGTTAGGAGGGA 1219
Query 1280 TATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAATGCCTTTTGAG 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1220 TATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAATGCCTTCTGAG 1279
Query 1340 TTTTAATCACTCCAAAAC 1357
|| ||||||||| |||||
Sbjct 1280 TTCTAATCACTCTAAAAC 1297
> Ahg943295 jgi|Araly1|943295|scaffold_603839.1
Length=1298
Score = 1461 bits (791), Expect = 0.0
Identities = 1120/1279 (88%), Gaps = 22/1279 (2%)
Strand=Plus/Plus
Query 81 AATGGCGGATAGATATGAGAACCAACCTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAAT 140
|||||| ||| |||| ||||||||| ||| ||| || ||| |||||||||||||||||||
Sbjct 20 AATGGCTGATGGATACGAGAACCAAGCTCTTGAAAATCTTGAGGGGAAGTATCAAGCAAT 79
Query 141 GGTTGTTTGCTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTCACTAT 200
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 80 GGTTGTTTGTTGTATTCTTGGAATCGGATCTCTCGTTTCTTGGAACAGTATGCTCACTAT 139
Query 201 AGCAGATTACTACTACAAAGTTTTTCCGGATTATCATCCTTCAAGGGTACTCACACTTGT 260
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 140 CGCAGATTACTACTACCAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTCACACTTGT 199
Query 261 ATACCAACCGTTTGCGCTTGGAACAATCTTGATTCTCGCATACCACGAATCGAAAATCAA 320
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 200 ATACCAACCAATCGCGCTTGGAACAATCATGATTCTCGCATACCACGAATCGAAAATCAG 259
Query 321 TACTCGAAAACGTAACCTCATTGGTTACATTCTATTCACAATATCCACATTCTTGCTCAT 380
|||||||||||| | ||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 260 TACTCGAAAACGCATCCTGACCGGTTACATCCTATTCACAATATCCACATTCTTGCTCAT 319
Query 381 AGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGTCCTTATATCGGTTTATGCGC 440
||| ||||||||| |||||||||||| ||||||||||| | |||||| | ||||||| |
Sbjct 320 AGTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATTGTTTTATGCAC 379
Query 441 TGTTGTTGCTTCTTTTGGCCTCGCGGATGCTACAGTTCAAGGAGGAATGATCGGTGATTT 500
||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||
Sbjct 380 AATTGTTGCTTCTTTTGGCCTCGCGGATGCTACCGTTAAAGGAGGATTGGTCGGTGATTT 439
Query 501 ATCATTGATGTGCCCTGAAC-TAGTTCAGTCAT-TCATGGGAGGTTTGGCTGTAT--CTG 556
||| |||||||||||||||| || | ||||||| | || | |||| || |||| |||
Sbjct 440 ATCTTTGATGTGCCCTGAACTTA-TCCAGTCATAT-ATAGCTGGTTCGG--GTATGGCTG 495
Query 557 GTGCGCTAACATCAGCACTTCGGCTAATAACTAAAGCAGCCTTTGAGAAAACAAACGACG 616
|||| ||||| |||| ||| | |||||||| ||||| |||||||||||| ||||| |||
Sbjct 496 GTGCTCTAACCTCAGTGCTTAGACTAATAACGAAAGCTGCCTTTGAGAAATCAAACAACG 555
Query 617 GTCCACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATGCATAGAGTTACTCTGTG 676
|| ||||||||||||||||||||||||||||||||| |||| |||||| || ||||| |
Sbjct 556 GTTTACGAAAAGGAGCAATGATGTTCTTAGCTATCTCAACATTCATAGAATTCCTCTGCG 615
Query 677 TG-TTTCTATATGCTTATGTGTTCCCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAA 735
|| | | ||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 616 TGATGT-TATATGCTTATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAA 674
Query 736 GCCGCTTCTGAAGGATCCAAAACTGTT-TCTGCTGATCTTGCTGCTGCTGGTATCCAAAA 794
|| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 675 GCGGCTTCTGAAGGATCCAAAACTGTTGT-TGCTGATCTTGCTGCTGCTGGTATCCAAAA 733
Query 795 TCAATCAGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAAGAGCTATT 854
||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 734 TCAATCAGATTTGAGTGATGATGATTCGAAGAATCAAAGGCTAAGCAAGAAAGAGCTGTT 793
Query 855 GATTCAAAACATAGACTATGCAGTGAATTTATTCCTCATCTACG-TTTGCACGTTATCCA 913
| ||||||| |||||| ||||||||||| ||||||||||||||| |||| || |||||||
Sbjct 794 GCTTCAAAATATAGACCATGCAGTGAATCTATTCCTCATCTACGTTTTG-ACATTATCCA 852
Query 914 TTTTCCCGGGGTTTTTATATGAAAACACAGGACAACACGGGCTAGGCGATTGGTACGCAC 973
|||| || || || ||||| |||||||| ||||||||||| |||||||||||||| ||||
Sbjct 853 TTTTTCCTGGATTCTTATACGAAAACACTGGACAACACGGACTAGGCGATTGGTATGCAC 912
Query 974 TTGTCTTAGTAGCGATGTACAATTGTTGGGACTTGGTCGGGAGGTACACACCACTGGTGA 1033
|| || ||||||||| |||||||| |||||| ||||||||||||||| |||||||| |||
Sbjct 913 TTATCCTAGTAGCGACGTACAATTTTTGGGATTTGGTCGGGAGGTACGCACCACTGCTGA 972
Query 1034 AATGGCTCAAGATTGAGAATAG-AAAGTTGA-TCACAATCGCGGTATTGTCACGTTATCT 1091
| ||| | ||| |||||||||| |||| | | || || ||||| || || |||||| |
Sbjct 973 ATTGGTTGAAGGTTGAGAATAGAAAAG--CACTAACGATAGCGGTTTTATCCCGTTATTT 1030
Query 1092 TCTCATTCCGGCGTTCTACTTCACTGCGAAATATGGTGATCAGGGATGGATGATTATGCT 1151
|||| |||| || |||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1031 TCTCGTTCCCGCATTCTACTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCT 1090
Query 1152 CA-TTTCTGTTTTGGGGTTGACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTC 1210
| | ||| ||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 1091 -AGTATCTATTTTGGGAATAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCTC 1149
Query 1211 CTAAAGGATACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTACTGGTGATATTTCTGT 1270
|||||||||||| |||||||||| ||||||| |||||||| || |||||| | ||| | |
Sbjct 1150 CTAAAGGATACACGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTT 1209
Query 1271 TAGGAGG-GATATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAAT 1329
||||||| | | ||| |||| || |||||| |||||||||||||||||| ||||| |||
Sbjct 1210 TAGGAGGAGC-AGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAAAAAT 1268
Query 1330 GCCTTTTGAGTTTTAATCA 1348
|| || |||||| | ||||
Sbjct 1269 GCATTCTGAGTTATCATCA 1287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57325818725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5