BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05130.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943295 jgi|Araly1|943295|scaffold_603839.1 1906 0.0
Ahg490161 jgi|Araly1|490161|fgenesh2_kg.6__3295__AT4G05110.1 1347 0.0
Ahg943294 jgi|Araly1|943294|scaffold_603838.1 1341 0.0
> Ahg943295 jgi|Araly1|943295|scaffold_603839.1
Length=1298
Score = 1906 bits (1032), Expect = 0.0
Identities = 1183/1258 (94%), Gaps = 2/1258 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGATGGATACGAGAACCATGCTCCTGAAAACCTTCAGGGGAAATATCAAGCAATG 60
||||| ||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||||
Sbjct 21 ATGGCTGATGGATACGAGAACCAAGCTCTTGAAAATCTTGAGGGGAAGTATCAAGCAATG 80
Query 61 GTTGTTTGTTGTATTCTTGGAATTGGATCTCTCTTTTCTTGGAATAGTATGCTCACTATC 120
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 81 GTTGTTTGTTGTATTCTTGGAATCGGATCTCTCGTTTCTTGGAACAGTATGCTCACTATC 140
Query 121 GCAGATTACTACTATCAAGTTTTCCCGGATTATCATCCTTCAAGGGTATTCACACTTATA 180
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 141 GCAGATTACTACTACCAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTCACACTTGTA 200
Query 181 TACCAACCAATTGCCCTTGGAACAATCATGATTCTCGCATACCGCGAATCGAAAATCAGT 240
||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 201 TACCAACCAATCGCGCTTGGAACAATCATGATTCTCGCATACCACGAATCGAAAATCAGT 260
Query 241 ACTAGGAAACGTATCCTTACCGGTTACATCCTATTCACGATATCCACATTCTTGCTGATA 300
||| | ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 261 ACTCGAAAACGCATCCTGACCGGTTACATCCTATTCACAATATCCACATTCTTGCTCATA 320
Query 301 GTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATTGTCTTATGCACA 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 321 GTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATTGTTTTATGCACA 380
Query 361 ATTGTTGCTTCTTTTGGCCTTGCGGATGCGACCGTTAAAGGAGGATTGGTCGGTGATTTA 420
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 381 ATTGTTGCTTCTTTTGGCCTCGCGGATGCTACCGTTAAAGGAGGATTGGTCGGTGATTTA 440
Query 421 TCTTTGATGTGCCCTGAACTTATCCAGTCATATATGGCCGGTTCGGGTATGGCTGGTGCT 480
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 441 TCTTTGATGTGCCCTGAACTTATCCAGTCATATATAGCTGGTTCGGGTATGGCTGGTGCT 500
Query 481 CTAACCTCAGTGCTTAGGCTAATAACTAAAGCAGCATTTGAGAAATCAAACAATAGTTTA 540
||||||||||||||||| |||||||| ||||| || ||||||||||||||||| |||||
Sbjct 501 CTAACCTCAGTGCTTAGACTAATAACGAAAGCTGCCTTTGAGAAATCAAACAACGGTTTA 560
Query 541 CGAAAAGGAGCAATGATATTCTTAGCAATCTCAACCTTCATAGAACTACTCTGCGTGATT 600
||||||||||||||||| |||||||| |||||||| ||||||||| | |||||||||||
Sbjct 561 CGAAAAGGAGCAATGATGTTCTTAGCTATCTCAACATTCATAGAATTCCTCTGCGTGATG 620
Query 601 TTATATGCATATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAAGCCGCT 660
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 621 TTATATGCTTATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAAGCGGCT 680
Query 661 TCTGAAGGATCTAAAACTGTTGTTGCTGATCTTGCTGCTGCTGGTATCCAAAATTTATCA 720
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 681 TCTGAAGGATCCAAAACTGTTGTTGCTGATCTTGCTGCTGCTGGTATCCAAAATCAATCA 740
Query 721 GATTTGAGTGATGATGATTCCAAGAATCAAATGCTAAGAAAGAAAGAGTTGTTGCTTCAA 780
|||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||
Sbjct 741 GATTTGAGTGATGATGATTCGAAGAATCAAAGGCTAAGCAAGAAAGAGCTGTTGCTTCAA 800
Query 781 AACATAGACCATGCAGTGAATCTATTCCTCATCTACGTTTTGACATTATCCATTTTTCCT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 AATATAGACCATGCAGTGAATCTATTCCTCATCTACGTTTTGACATTATCCATTTTTCCT 860
Query 841 GGATTCTTATACGAAAACACGGGACAACACGGACTAGGTGATTGGTATGCACTTATCCTA 900
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 861 GGATTCTTATACGAAAACACTGGACAACACGGACTAGGCGATTGGTATGCACTTATCCTA 920
Query 901 GTAGCGACATACAATTTTTGGGATTTGTTCGGGAGGTACGCACCGCTGGTGAAATGGCTG 960
|||||||| |||||||||||||||||| |||||||||||||||| ||| |||| ||| ||
Sbjct 921 GTAGCGACGTACAATTTTTGGGATTTGGTCGGGAGGTACGCACCACTGCTGAATTGGTTG 980
Query 961 AAGCTTGAGAATAGAAAGGCCCTAACGATTGCGGTCTTGA-CCCGTTATTTCCTCGTTCC 1019
||| ||||||||||||| || |||||||| ||||| || | |||||||||| ||||||||
Sbjct 981 AAGGTTGAGAATAGAAAAGCACTAACGATAGCGGT-TTTATCCCGTTATTTTCTCGTTCC 1039
Query 1020 GGCATTCTATTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCTCGTTTCTAT 1079
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1040 CGCATTCTACTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCTAGTATCTAT 1099
Query 1080 TTTGGGATTAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCCCCTAACGGGTA 1139
||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1100 TTTGGGAATAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAAGGATA 1159
Query 1140 CAAGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTTTAGGAGGAGC 1199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CACGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTTTAGGAGGAGC 1219
Query 1200 AGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAAATATGCTTTCTGA 1257
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1220 AGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAAAAATGCATTCTGA 1277
> Ahg490161 jgi|Araly1|490161|fgenesh2_kg.6__3295__AT4G05110.1
Length=1368
Score = 1347 bits (729), Expect = 0.0
Identities = 1090/1266 (86%), Gaps = 18/1266 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATGGATACGAGAACCATGCTCCTGAAAACCTTCAGGGGAAATATCAAGCAATG 60
||||||||| ||||| | |||| ||||||| || ||||||||||| ||||||||||||
Sbjct 57 ATGGCGGATATATACGGGCACCAAACTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAATG 116
Query 61 GTTGTTTGTTGTATTCTTGGAATTGGATCTCTCTTTTCTTGGAATAGTATGCTCACTATC 120
||||||| |||||||||||||||||||||||| |||||||||| |||||||| | |||
Sbjct 117 GTTGTTTACTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTTAGTATA 176
Query 121 GCAGATTACTACTATCAAGTTTTCCCGGATTATCATCCTTCAAGGGTATTCACACTTATA 180
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 177 GCAGATTACTACTACCAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTCACACTTGTA 236
Query 181 TACCAACCAATTGCCCTTGGAACAATCATGATTCTCGCATACCGCGAATCGAAAATCAGT 240
|||||||| |||| |||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 237 TACCAACCGTTTGCGCTTGGAACAATCGTGATTCTCGCATACCACGAATCGAAAATCAAT 296
Query 241 ACTAGGAAACGTATCCTTACCGGTTACATCCTATTCACGATATCCACATTCTTGCTGATA 300
||| ||||||||| ||| | ||||||||| |||| ||| ||||||||||||| || |||
Sbjct 297 ACTCGGAAACGTAACCTGATCGGTTACATTCTATACACAATATCCACATTCTCACTCATA 356
Query 301 GTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATT-GTCTTATGCAC 359
|| ||||||| | |||||||||||| ||||||||||||| ||||||| || |||||| |
Sbjct 357 GTTTTGGATTCGGCAACAAAAGGACGTGGTGGAATCGGACCTTATATTGGT-TTATGCGC 415
Query 360 AATTGTTGCTTCTTTTGGCCTTGCGGATGCGACCGTTAAAGGAGGATTGGTCGGTGATTT 419
| | ||||||||||| ||||| |||||||| |||||| |||||||| || | ||||||||
Sbjct 416 AGTCGTTGCTTCTTTCGGCCTCGCGGATGCTACCGTTCAAGGAGGAATGATAGGTGATTT 475
Query 420 ATCTTTGATGTGCCCTGAACTTA-TCCAGTCATAT-ATGGCCGGTTCGGGTATGGCTGGT 477
||| |||||||||||||||| || | ||||||| | |||| |||| | | | ||||||
Sbjct 476 ATCATTGATGTGCCCTGAAC-TAGTTCAGTCAT-TCATGGGAGGTTTAGCTGTAGCTGGT 533
Query 478 GCTCTAACCTCAGTGCTTAGGCTAATAACTAAAGCAGCATTTGAGAAATCAAACAATAGT 537
|| ||||| |||| ||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 534 GCGCTAACATCAGCACTTAGGCTAATAACTAAAGCAGCTTTTGAGAAAACAAACAACGGT 593
Query 538 TTACGAAAAGGAGCAATGATATTCTTAGCAATCTCAACCTTCATAGAACTACTCTGCGTG 597
|||| |||||||||||||| |||||||| ||||| || |||||||| ||||||| |||
Sbjct 594 CTACGTAAAGGAGCAATGATGTTCTTAGCTATCTCCACATTCATAGATTTACTCTGTGTG 653
Query 598 ATTTTATATGCATATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAAGCC 657
|| |||| | |||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 654 ATGCTATACACGTATGTGTTACCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAAGCC 713
Query 658 GCTTCTGAAGGATCTAAAACTGTTGT-TGCTGATCTTGCTGCTGCTGGTATCCAAAATTT 716
|||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 714 GCTTCTGAAGGATCCAAAACTGTT-TCTGCTGATCTTGCTGCCGCTGGTATCCAAAATCA 772
Query 717 ATCAGATTTGAGTGATGATGATTCCAAGAATCAAATGCTAAGAAAGAAAG-AGTTGTTGC 775
||||| |||| ||||||||||||||||||||||| |||||| || |||| || |||||
Sbjct 773 ATCAGGCTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAA-AAAGGAGCTGTTGA 831
Query 776 TTCAAAACATAGACCATGCAGTGAATCTATTCCTCATCTACGTTT-TGACATTATCCATT 834
|||||||||||||| ||||||||||| |||||||||||||||||| | |||||||| |||
Sbjct 832 TTCAAAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGT-ACATTATCTATT 890
Query 835 TTTCCTGGATTCTTATACGAAAACACGGGACAACACGGACTAGGTGATTGGTATGCACTT 894
|| || || ||||| || |||||||| ||||||||||| ||||| | |||||||||||||
Sbjct 891 TTCCCGGGGTTCTTGTATGAAAACACAGGACAACACGGGCTAGGCGCTTGGTATGCACTT 950
Query 895 ATCCTAGTAGCGACATACAATTTTTGGGATTTGTTCGGGAGGTACGCACCGCTGGTGAAA 954
|| ||||||| | ||||| |||||||||||| ||||||||||| | ||||||||||||
Sbjct 951 GTCTTAGTAGCTATGTACAACTTTTGGGATTTGGTCGGGAGGTACACGCCGCTGGTGAAA 1010
Query 955 TGGCTGAAGCTTGAGAATAGAAAGGCCCTAACGATTGCGGTCTTGACCCGTTATTTCCTC 1014
||||| ||| ||||||||||||| | || | |||||| ||| | |||||| |||||
Sbjct 1011 TGGCTCAAGATTGAGAATAGAAAATTAATCACAAGTGCGGTTTTGTCACGTTATCTCCTC 1070
Query 1015 GTTCCGGCATTCTATTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCTCGTT 1074
||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 ATTCCGGCGTTCTACTTCACTGCAAAATATGGTGATCAAGGATGGATGATTATGCTCGTT 1130
Query 1075 TCTATTTTGGGATTAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCCCCTAAC 1134
|| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1131 TCCGCTTTGGGATTAACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAA 1190
Query 1135 GGGTACAAGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTTTAGGA 1194
|| ||||||||||||||| ||||||| |||||||| ||||||||| | ||| | ||||||
Sbjct 1191 GGATACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTGCTGGTGATATTTCTGTTAGGA 1250
Query 1195 GG-AGCAGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAA-ATATGC-T 1251
|| | | ||| ||| || |||||| |||||||||||||||||| ||||| | |||| |
Sbjct 1251 GGGAT-ATTTGCGGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGA-ATGCCT 1308
Query 1252 TTCTGA 1257
|| |||
Sbjct 1309 TT-TGA 1313
> Ahg943294 jgi|Araly1|943294|scaffold_603838.1
Length=1298
Score = 1341 bits (726), Expect = 0.0
Identities = 1092/1269 (86%), Gaps = 24/1269 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGATGGATACGAGAACCATGCTCCTGAAAACCTTCAGGGGAAATATCAAGCAATG 60
||||||||| ||||||||||||| |||||||| || || |||||||| || |||||||||
Sbjct 22 ATGGCGGATAGATACGAGAACCAAGCTCCTGAGAAGCTCCAGGGGAAGTACCAAGCAATG 81
Query 61 GTTGTTTGTTGTATTCTTGGAATTGGATCTCTCTTTTCTTGGAATAGTATGCTCACTATC 120
|||||||| ||||||||||| |||||||||||| |||||||||| |||||||| |||||
Sbjct 82 GTTGTTTGCTGTATTCTTGGGATTGGATCTCTCGTTTCTTGGAACAGTATGCTTACTATA 141
Query 121 GCAGATTACTACTATC-AAGTTTTCCCGGATTATCATCCTTCAAGGGTA-TTCACACTTA 178
|||||| ||||||| | |||||||||||||||||||||||||||||||| || ||||||
Sbjct 142 GCAGATCACTACTA-CAAAGTTTTCCCGGATTATCATCCTTCAAGGGTACTT-ACACTTG 199
Query 179 TATACCAACCAATTGCCCTTGGAACAATCATGATTCTCGCATACCGCGAATCGAAAATCA 238
|||||||||| |||| |||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 200 TATACCAACCGTTTGCGCTTGGAACTATCGTGATTCTCGCATACCACGAATCGAAAATCA 259
Query 239 GTACTAGGAAACGTATCCTTACCGGTTACATCCTATTCACGATATCCACATTCTTGCTGA 298
||| | ||||||| ||| | |||||||| |||||||||||||||||||||||||| |
Sbjct 260 ATACCCGAAAACGTAACCTGATTGGTTACATTCTATTCACGATATCCACATTCTTGCTCA 319
Query 299 TAGTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATTG-TCTTATGC 357
|||| ||||||||| |||||||||||| ||||||||||||| |||||||| | ||||||
Sbjct 320 TAGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGACCTTATATTGGT-TTATGC 378
Query 358 ACAATTGTTGCTTCTTTTGGCCTTGCGGATGCGACCGTTAAAGGAGGATTGGTCGGTGAT 417
|| | ||||||||||||||||| |||||||| |||||| |||||||| || ||||||||
Sbjct 379 GCAGTCGTTGCTTCTTTTGGCCTCGCGGATGCTACCGTTCAAGGAGGAATGATCGGTGAT 438
Query 418 TTATCTTTGATGTGCCCTGAACTTA-TCCAGTCATAT-ATGGCCGG-TTCGGGTATGGCT 474
||||| ||||||||||||||||| | | ||||||| | |||| || || || | | |||
Sbjct 439 TTATCATTGATGTGCCCTGAACT-AGTTCAGTCAT-TCATGGGAGGATT-GGCTGTAGCT 495
Query 475 GGTGCTCTAACCTCAGTGCTTAGGCTAATAACTAAAGCAGCATTTGAGAAATCAAACAAT 534
||||| ||||| |||| |||||||||||||| |||||||| ||||||||| |||| |
Sbjct 496 GGTGCGCTAACATCAGCACTTAGGCTAATAACGAAAGCAGCTTTTGAGAAAAAAAACGAC 555
Query 535 AGTTTACGAAAAGGAGCAATGATATTCTTAGCAATCTCAACCTTCATAGAACTACTCTGC 594
|||||||||||||||||||||| |||||||| ||||| || ||||||||| | ||||||
Sbjct 556 GGTTTACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATTCATAGAATTCCTCTGC 615
Query 595 GTGATTTTATATGCATATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAA 654
||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 616 GTGATGGTATATGCTTATGTGTTCCCAAAACTCCCAATTGTTAAGTATTACCGAAGAAAA 675
Query 655 GCCGCTTCTGAAGGATCTAAAACTGTTGT-TGCTGATCTTGCTGCTGCTGGTATCCAAAA 713
|| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 676 GCTGCTTCTGAAGGATCCAAAACTGTT-TCTGCTGATCTTGCTGCTGCTGGTATCCAGAA 734
Query 714 TTTATCAGATTTGAGTGATGATGATTCCAAGAATCAAATGCTAAGAAAGAAAGAGTTGTT 773
| |||||| |||| ||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 735 TCAATCAGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAAGAGTTGTT 794
Query 774 GCTTCAAAACATAGACCATGCAGTGAATCTATTCCTCATCTACGTTT-TGACATTATCCA 832
| | |||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 795 GATACAAAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGT-ACATTATCCA 853
Query 833 TTTTTCCTGGATTCTTATACGAAAACACGGGACAACACGGACTAGGTGATTGGTATGCAC 892
|||| || || ||||| || ||||| || ||||||||||| || || | |||||| ||||
Sbjct 854 TTTTCCCCGGGTTCTTGTATGAAAATACAGGACAACACGGGCTGGGCGCTTGGTACGCAC 913
Query 893 TTATCCTAGTAGCGACATACAATTTTTGGGATTTGTTCGGGAGGTACGCACCGCTGGTGA 952
|| || ||||||||| ||||||| ||||||||| | ||||||||| | | ||||||||
Sbjct 914 TTGTCTTAGTAGCGATGTACAATTGCTGGGATTTGGTAGGGAGGTACACGCAGCTGGTGA 973
Query 953 AATGGCTGAAGCTTGAGAATAGAAAGGCCC-TAACGATTGCGGTCTTGACC-CGTTATTT 1010
||||||| ||| ||||||||||||| | | || ||||| || || | | |||||| |
Sbjct 974 AATGGCTCAAGATTGAGAATAGAAAA-CTGATCACAATTGCAGTTTT-ATCACGTTATCT 1031
Query 1011 CCTCGTTCCGGCATTCTATTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCT 1070
|||| ||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 1032 CCTCATTCCGGCGTTCTACTTCACTGCGAAATATGGTGATCAAGGATGGATGATTATGCT 1091
Query 1071 CGTTTCTATTTTGGGATTAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCCCC 1130
||||||||||||||||| |||| ||||||||||||||| |||||| | || | ||| ||
Sbjct 1092 TGTTTCTATTTTGGGATTGACTAATGGACATCTCACTGTGTGCATTCTCACCACAGCTCC 1151
Query 1131 TAACGGGTACAAGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTTT 1190
||| || || |||||||||||| ||||||| |||||||| ||||||||| | ||| | ||
Sbjct 1152 TAATGGCTATAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTGCTGGTGATATTTCTGTT 1211
Query 1191 AGGAGG-AGCAGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAA-ATAT 1248
|||||| | | ||| |||| || |||||| |||||||||||||||||| ||||| | ||
Sbjct 1212 AGGAGGGAT-ATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGA-AT 1269
Query 1249 GCTTTCTGA 1257
|| ||||||
Sbjct 1270 GCCTTCTGA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5