BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05150.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490165 jgi|Araly1|490165|fgenesh2_kg.6__3299__AT4G05150.1 2414 0.0
> Ahg490165 jgi|Araly1|490165|fgenesh2_kg.6__3299__AT4G05150.1
Length=1602
Score = 2414 bits (1307), Expect = 0.0
Identities = 1526/1628 (94%), Gaps = 29/1628 (2%)
Strand=Plus/Plus
Query 18 aaaaacaaaaaTCCCCAAATTACCAAAATCCTCGGCGACAAagaggagagatagagagag 77
||| ||||||||||||||||||||||||||||||||||| || | ||| | ||||||||
Sbjct 1 AAACACAAAAATCCCCAAATTACCAAAATCCTCGGCGAC-AA-A-GAG-G--AGAGAGAG 54
Query 78 agaaagagGCGAAAATAATGGCGTCGATCCCTCCGCCGGAGCTTGACAACGACTCACTGG 137
|| ||| |||||||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 55 AG--AGA---GAAAATAATGGCTTCGATCCTTCCGCCGGAGCTGGACAACGACTCACTGG 109
Query 138 CGTCATCGCCGAGATCGGAGTACGATAGTCAGCCACGCGTACGGTTCATGTGTACTTTTG 197
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 110 CATCATCGCCGAGATCGGAGTACGATAGTCAGCCACGTGTACGGTTCATGTGTACTTTCG 169
Query 198 GAGGAAGGATCTTGCCACGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 257
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GAGGAAGGATCTTGCCTCGTCCGCCGGATAATCAGCTCTGTTACGTCGGCGGCGATAATC 229
Query 258 GCATGGTCGCTGTTCATCGTCACACTACTTTCGCCTCTCTCCTTAGTAAACTTGCTAAAC 317
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 230 GTATGGTCGCTGTTCATCGTCACACTACTTTTGCTTCTCTCCTTAGTAAACTTGCTAAAC 289
Query 318 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TCTCCGGTAAAAGCAACATAAGCGTGAAGTACCAGCTACCAAACGAAGATCTTGACGCGT 349
Query 378 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAATACGACCGCGTCG 437
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 350 TGATTTCCGTATCAACGGACGAAGATGTAGAGAACATGATGGACGAGTACGACCGCGTCG 409
Query 438 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTTTTTCTCTTCACCAAAAACGTCG 497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 CACAGAATCAAAACCCACGCGCCTCTCGTCTTCGTCTCTTTCTCTTCACCAAAAACGTCG 469
Query 498 CCGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGCTCTCTCCTCGATAGCTCTG 557
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 470 ACGGAGAAGAAGATAACGATAGTCGAGCTAGCAGTATCAGTTCTCTCCTCGATAGCTCCG 529
Query 558 TTAATCGGGAGCAATGGTTCCTCGACGCTCTTAACCTCGGTTCTTCCGCCGCCGCAACCG 617
||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 530 TTAATCGAGAGCAGTGGTTCCTCGATGCTCTCAATCTCGGTTCTTCCGCCGCCGCAACCG 589
Query 618 CGG-TATCTAACGGTGGGTCCGGTAGAGTCTTT-GAGCGAGTTAGATCTGAAGTCTCGTC 675
| | | |||||||| || ||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 590 CAGCT-TCTAACGGCGGATCCGGTAGAGT-TTTCGAGCGCGTTAGATCTGAAGTCTCGTC 647
Query 676 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTCGATGAAACTGCTCC 735
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 648 GATTGTTTCTGAAGTTCCTGATTATCTCTTTGGATTGGATAATTTTGATGAAACTGCTCC 707
Query 736 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATCCAACGAGAAGTCTCGACGCT 795
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 708 GCCGCATGAGCTTCGTGATCGTGATCCGAGAGCTAAGATTCAACGAGAAGTCTCGACGCT 767
Query 796 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCGACGTCTTCGGC 855
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 TTCGGATCCTGGTTCGCCTCGTCGCGATGTTCCTTCGCCGTATGGTTCTACGTCTTCGGC 827
Query 856 TCCTGTGATGCGAATATCTACACCGGAACTTCCACCACCAGTTTTTATTAAACCGGAAAG 915
|||||||||||||| |||||||||||||||||||||||| ||||| | |||||| |||||
Sbjct 828 TCCTGTGATGCGAACATCTACACCGGAACTTCCACCACCGGTTTTGACTAAACCAGAAAG 887
Query 916 TCCAGAACCGGTTTCGACTCCGAAATCCAATCCTCAACCGGAACAAGTAATGCAACAGAG 975
|||||||||||||||||| || ||||| || ||||||||||||||||||| ||||| ||
Sbjct 888 TCCAGAACCGGTTTCGACCCCTAAATCTGATTCTCAACCGGAACAAGTAATTCAACAAAG 947
Query 976 TAATCTCCCGGTTAACTCGCAATGGCAATATGCCCCTGGCCCAGGCCAACAGGTTCATTA 1035
|||||||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 948 TAATCTCCCGGTTAACACGCAATGGCAATACGCCCCAGGCCCAGGCCCACAGGTTCATTA 1007
Query 1036 CCAGGGTCATACCATTCACCAATCACCGGTTTATTACGTTCCTGGTTCGGTTCCGGGTAA 1095
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1008 CCAGGGTCATACCATTCACCAAACACCGGTTTATTACGTTCCTGGTTCTGTTCCGGGTAA 1067
Query 1096 TCATATGGTCCAGCAAGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1155
| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TAATATGGTTCAACCGGGAAATCATATGGTTCAACCGGGTAATCATATGGTACAACCGGT 1127
Query 1156 TCAAATGCCGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1215
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TCAAATGCAGGGTCAGTATCTTCAACAATACCATCATGTACCAATGGGATACCACCAACC 1187
Query 1216 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAACGGTTAGGCCGGTTAT 1275
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1188 TCAGACTCATCAGATGGCTGGTCCGGGTCAAGTATATGGTGGAGCGGTTAGGCCGGTTAT 1247
Query 1276 GATGGCAGTTGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1335
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GATGGCAGTGGATGGAATGAACCGGACGGGTTATTATGGAATGAAAACACCCGGTCCGGT 1307
Query 1336 TCAAATGTATCAGCATCACACTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAACAATA 1395
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1308 TCAAATGTATCATCAGCACCCTGGTATGGTTGTTCCTGGTGTAGAAGAACAACAA---TA 1364
Query 1396 CAGAACCGAAACGGATTCGGATACGGGTCGGGCTTCTTAGCTGTTTGAAGAAGAAATATG 1455
||||||||| |||||||||||| |||||||||||||||||||| |||||||| | ||||
Sbjct 1365 CAGAACCGAGACGGATTCGGATCCGGGTCGGGCTTCTTAGCTGGTTGAAGAA-A--TATG 1421
Query 1456 AAAAATTATCACATCCGGGGTTTTCGTCTTTTCATTGGAGTCGTTCTTATTCGTTACtgt 1515
|||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1422 AAAAATAATCACATCCGGGGTTTTCGTATTTTCATTGGAGTCGTACTTATTCGTTACTGT 1481
Query 1516 gtgaactgtgtattattttttgtttt-acttttgtaaaatttatttttgtgtgtaataat 1574
|||||||||||| ||||||||||||| ||| || || ||| |||||| ||||| ||||
Sbjct 1482 GTGAACTGTGTAATATTTTTTGTTTTTACTCTT-TATTATT-ATTTTT-TGTGTG-TAAT 1537
Query 1575 tttgtattaCAAAATATAATGAACAGTAAAACCCAATAATAATAACATTATAATCTATCA 1634
||||||||||||| | | |||||||||||||||||||||||| ||||||||||| |||
Sbjct 1538 TTTGTATTACAAACTGTGATGAACAGTAAAACCCAATAATAA---CATTATAATCTGTCA 1594
Query 1635 ATAGTGAA 1642
||| ||||
Sbjct 1595 ATAATGAA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5