BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05160.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490166 jgi|Araly1|490166|fgenesh2_kg.6__3300__AT4G05160.1 2678 0.0
> Ahg490166 jgi|Araly1|490166|fgenesh2_kg.6__3300__AT4G05160.1
Length=1812
Score = 2678 bits (1450), Expect = 0.0
Identities = 1679/1791 (94%), Gaps = 9/1791 (1%)
Strand=Plus/Plus
Query 48 TCCTCCGAGATCGGAA-AATATGGAGAAATCCGGCTACGGCAGAGACGGAATTTACCGAT 106
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTCCGAGATCGGAAGAA-ATGGAAAAATCCGGCTACGGCAGAGACGGAATTTACCGAT 59
Query 107 CACTTCGTCCAACACTCGTTCTTCCCAAAGATCCAAACACATCGTTAGTCTCTTTCCTCT 166
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACTACGTCCGACGCTAGTTCTTCCCAAAGATCCAAACACATCGTTAGTCTCTTTCCTCT 119
Query 167 TCCGTAACTCCTCATCTTACCCATCAAAACTCGCTATCGCCGATTCCGATACCGGCGATT 226
||||||| || || |||||||||||||| || |||||||||||||||||| |||| || |
Sbjct 120 TCCGTAATTCATCGTCTTACCCATCAAAGCTTGCTATCGCCGATTCCGATTCCGGTGACT 179
Query 227 CCTTAACCTTCTCTCAGCTCAAATCCGCCGTCGCTAGACTCGCTCACGGATTCCACCGTT 286
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 180 CCTTAAACTTCTCTCAGCTCAAATCCGCCGTCGCTAGACTCGCTCACGGGTTTCACCGTC 239
Query 287 TAGGTATTCGCAAAAACGACGTCGTGTTGATTTTCGCTCCTAACTCTTACCAGTTCCCTC 346
||||| |||| |||||||||||||||||||| |||||||| || |||||||| |||||||
Sbjct 240 TAGGTGTTCGTAAAAACGACGTCGTGTTGATCTTCGCTCCGAATTCTTACCAATTCCCTC 299
Query 347 TCTGTTTCCTCGCCGTAACCGCGATCGGCGGCGTTTTCACCACCGCGAATCCTCTTTACA 406
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTGTTTCCTCGCCGTAACTGCAATCGGCGGCGTTTTCACCACCGCGAATCCTCTTTACA 359
Query 407 CTGTGAATGAGGTTTCGAAACAGATCAAAGATTCGAATCCGAAGATTATCATATCCGTTA 466
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 360 CTGTGAATGAGGTTTCTAAACAGATCAAAGATTCGAATCCGAAGATTATCATCTCTGTTA 419
Query 467 ATCAACTGTTTGATAAGATCAAAGGCTTTGATCTTCCCGTTGTTCTACTTGGATCTAAAG 526
||||| |||||||||| ||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 420 ATCAATTGTTTGATAAAATCAAGGGTTTTAATCTTCCCGTTGTTCTACTTGGATCTAAAG 479
Query 527 ACACCGTAGAGATTCCTCCGGGATCGAATTCGAAGATTCTTAGTTTCGATAACGTGATGG 586
| ||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 480 ATTCCGTACAGATTCCTCCGGGATCGAATTCGAAGATTCTTAGTTTCAATGACGTTATGG 539
Query 587 AACTCTCAGAGCCAGTTTCTGAGTACCCGTTCGTTGAGATTAAGCAATCAGATACAGCTG 646
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 540 AGCTCTCAGAGCCAGTTTCTGATTACCCTTTCGTTGAGATTAAGCAATCAGATACTGCTG 599
Query 647 CATTGTTGTATTCATCAGGAACTACAGGAACAAGCAAAGGTGTTGAATTGACTCATGGGA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CATTGTTGTATTCATCAGGAACTACAGGAACAAGCAAAGGTGTTGAATTGACTCATGGGA 659
Query 707 ATTTCATTGCAGCTTCGTTAATGGTTACTATGGATCAAGATCTTATGGGAGAGTATCATG 766
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 660 ATTTCATTGCAGCTTCGTTGATGGTGACGATGGATCAAGATCTTATGGGAGAGTATCATG 719
Query 767 GCGTCTTCTTGTGTTTTCTTCCTATGTTTCATGTTTTTGGTTTGGCAGTGATTACTTATT 826
|||| |||||||||||||| || ||||||||||||||||| ||| | |||||||||||||
Sbjct 720 GCGTGTTCTTGTGTTTTCTACCAATGTTTCATGTTTTTGGGTTGACTGTGATTACTTATT 779
Query 827 CTCAGCTTCAGAGAGGAAATGCTTTGGTTTCTATGGCGAGATTTGAGCTTGAGTTGGTGC 886
|||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 780 CTCAGCTTCAGAGAGGGAATGCTTTGGTCTCTATGGCGAAATTTGAGCTTGAGTTGGTGC 839
Query 887 TTAAGAATATTGAGAAGTTTAGAGTTACTCATCTTTGGGTTGTTCCTCCTGTGTTCCTTG 946
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 TTAAGAACATTGAGAAGTATAGAGTCACTCATCTTTGGGTTGTTCCTCCTGTGTTCCTTG 899
Query 947 CTCTTTCCAAGCAGAGTATTGTGAAAAAGTTTGATCTTTCTTCACTTAAGTATATTGGTT 1006
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 900 CTCTTTCCAAGCAAAGTATTGTGAAAAAGTTTGATCTTTCTTCACTTAAGTACATTGGAT 959
Query 1007 CAGGAGCTGCTCCTCTTGGTAAAGATTTGATGGAGGAATGTGGAAGAAACATTCCTAATG 1066
||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 960 CAGGAGCTGCTCCTCTTGGGAAAGATTTGATGGAGGAGTGTGGAAAAAACATCCCTAATG 1019
Query 1067 TTTTGCTTATGCAGGGATATGGAATGACTGAAACGTGTGGAATTGTGTCTGTGGAAGACC 1126
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 TTTTGCTTATGCAGGGCTATGGAATGACTGAAACGTGTGGAATTGTCTCTGTGGAAGACC 1079
Query 1127 CGAGACTCGGGAAACGGAACTCTGGTTCAGCTGGAATGCTTGCTCCAGGTGTTGAAGCTC 1186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 CGAGACTCGGGAAACGGAACTCTGGTTCAGCTGGAATGCTTGCTCCAGGAGTTGAAGCTC 1139
Query 1187 AGATAGTGAGTGTAGAAACTGGAAAATCTCAGCCTCCAAATCAACAAGGAGAAATCTGGG 1246
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1140 AGATAGTTAGTGTAGAAACTGGAAAATCTCAGCCTCCAAATCAACAAGGCGAGATCTGGG 1199
Query 1247 TTCGAGGACCAAACATGATGAAAGGGTACCTCAATAACCCTCAGGCTACTAAAGAAACAA 1306
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1200 TTCGAGGGCCAAACATGATGAAAGGGTATCTAAATAACCCTCAGGCTACTAAAGAAACAA 1259
Query 1307 TAGACaaaaaaaGTTGGGTGCATACCGGAGATCTTGGATATTTCAACGAAGATGGTAACC 1366
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAGATAAAAAAGGTTGGGTACATACCGGAGATCTTGGATATTTCAACGAAGATGGTAACC 1319
Query 1367 TTTATGTTGTTGATCGAATCAAAGAACTTATCAAATACAAAGGCTTCCAGGTTGCTCCAG 1426
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTTATGTTGTTGATCGACTCAAAGAACTTATCAAATACAAAGGCTTCCAGGTTGCTCCAG 1379
Query 1427 CTGAACTAGAAGGTCTTCTTGTATCACATCCTGATATACTAGATGCTGTCGTTATCCCGT 1486
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1380 CTGAGCTAGAAGGTCTTCTTGTATCGCATCCTGAAATACTAGATGCTGTCGTTATCCCAT 1439
Query 1487 TCCCTGATGAAGAAGCAGGTGAAGTTCCAATTGCGTTTGTTGTTCGATCACCAAATAGCT 1546
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 TCCCTGACGAAGAAGCAGGTGAAGTTCCAATTGCATTTGTTGTTCGATCACCAAATAGCT 1499
Query 1547 CAATAACAGAGCAAGATATTCAAAAGTTCATAGCCAAACAGGTCGCTCCTTACAAAAGAT 1606
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 CAATTACAGAGCAAGATATTCAAAAGTTCATTGCCAAACAGGTCGCTCCTTACAAAAGAT 1559
Query 1607 TACGACGAGTGAGCTTCATCAGC-CTTGTTCCAAAATCCGCTGCTGGTAAAATCTTGAGA 1665
||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 1560 TACGACGAGTGAGCTTCATCAACACA-GTTCCAAAATCTGCTGCTGGTAAAATCTTGAGA 1618
Query 1666 AGAGAACTTGTTCAGCAAGTAAGATCCAAGATGTGAAGAA---TCTCGTAGAACAGA-GA 1721
||||| ||||||||||||||| |||||||||||||||||| ||||| ||| | || ||
Sbjct 1619 AGAGAGCTTGTTCAGCAAGTACGATCCAAGATGTGAAGAAGAATCTCGGAGACC-GAAGA 1677
Query 1722 TCAAAATCTGTGTGTTGTCTCGCTCCTTTTACCATATTTATGTACCATTTCAAAATAAAC 1781
||| ||||||||||||| ||| |||||| ||||||||||||||||| |||||| |||||
Sbjct 1678 TCAGAATCTGTGTGTTGCCTCTTTCCTTTCACCATATTTATGTACCACTTCAAATTAAAC 1737
Query 1782 GCTTACACAACCCACAAAAGAGAATAAATAATCCAATACCATAGTCAATAC 1832
| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 GGTTACACAAACCACAAAAGTGAATAAATAATCCAATACCATAGTCAATAC 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5