BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05170.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895592 jgi|Araly1|895592|Al_scaffold_0006_3588 1247 0.0
> Ahg895592 jgi|Araly1|895592|Al_scaffold_0006_3588
Length=903
Score = 1247 bits (675), Expect = 0.0
Identities = 833/907 (92%), Gaps = 20/907 (2%)
Strand=Plus/Plus
Query 1 ACGGAAGAGTTTGAGATCGCAGGAATCTCCACCGGAGCTTGGTGGAGCTCGCCAACAAAC 60
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 4 ACGGAAGAGTTTGAGATCGCCGGAATCTCCACGGGAGCTTGGTGGAGTTCGCCAACAAAC 63
Query 61 ACCGCCGCAGTATTCTCTGGCTACTCGCTGCCATGTTCCACTGAGATTAGCCCTGATGTC 120
||| || || ||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 64 ACCACCACAATATACTCTGGCTACTCGCTGCCACGTTCCACTGAGATTAGCCTTGATGTC 123
Query 121 ACAAATTTCGGATGGCAAAACTTCGATAACAAGATTAACGATCATAATGATGGTTGTATG 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 124 ACAAATTTCGGATGGCAAAACTTCGATAACAAGATTAACGATCCTAATGATGGTTTTATT 183
Query 181 AACATGCATAATAGTTTCTTCGAAGGACTATTAATCGATCCTAACGATCAATTACTACCG 240
|||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||
Sbjct 184 AACATGCATAATAGTTTCTTTGAAGG---ATTATTCGATCCTAACGAGCAATTACTACCG 240
Query 241 GATCCATGGTCC-AAAAGTACAATTCCTAACGCTAAATCTGAGCTCCTTGAAAACTTCCC 299
||| | ||| || ||||||||| ||||||| || ||||| ||||||||||||| ||||||
Sbjct 241 GATTCTTGG-CCAAAAAGTACAGTTCCTAATGCGAAATCCGAGCTCCTTGAAAGCTTCCC 299
Query 300 ATTCTTAGATAACATGTTCTTGGTCGATTCAGAAGCTGAATCTTTGTTGGATCATGAAAT 359
|||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||
Sbjct 300 ATTCTTAGATAACATGTTCTTGATCGATACAGAAGCTGAATCATTCTTGGATCATGAAAT 359
Query 360 CAGAAACCATAAGTCGTCTAAGGAGCAAATTACACAAGACTACAAGAATCTTACTTCAAA 419
|||||||||||| | ||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 360 CAGAAACCATAA--C-TCTAAGGAGCAAACTACACAAGACTGTAAGAATTTTACTTCAAA 416
Query 420 ---GAG-G--A-G--TGAAGAATTAGAAGAGAACAGCGATGAGTATTCACCGCGATTACT 470
||| | | | |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 417 GGGGAGCGAAAGGACTGAAGAATTAGAAGAGAACAGCGACGAATATTCACCGCGATTACT 476
Query 471 AAAAAGACCGAGACTCGAGACACTATCTCCATTGCCAAGCTTCAAAGTTCGTAAAGAAAA 530
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 477 AAAAAGACAGAGACTCGAGACACTATCTCCATTGCCAAGCTTCAAGGTTCGTAAAGAGAA 536
Query 531 ACTCGGAGATAGAATCACTGCGCTTCAGCAACTGGTTTCTCCATTTGGCAAGACAGATAC 590
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 ACTCGGAGATAGAATCACTGCGCTTCAGCAACTGGTTTCACCATTTGGCAAGACAGATAC 596
Query 591 AGCTTCTGTTCTCAACGAAGCTGTAGAGTACATAAAGTTTCTTCAAGAACAAGTCACTGT 650
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGCTTCTGTTCTCAATGAAGCTGTAGAGTACATAAAGTTTCTTCAAGAACAAGTCACTGT 656
Query 651 ATTGAGTAATCCAGAACAGAACACCATAGGATCTGTTCAACAACAGCAGTGTTCAAACAA 710
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 657 ATTGAGTAATCCAGACCAGAACACCATAGGATCTGTTCAACAACAGCAGTGTTCAGACAA 716
Query 711 GAAATCTATCAATACTCAAG--GA-GAAGTAGAAGAAGACGAATGTAGTCCAAGAAGATA 767
||||||||| |||||||||| || |||| ||||||||| |||||||||||||||| | |
Sbjct 717 GAAATCTATGAATACTCAAGAAGAAGAAGAAGAAGAAGAAGAATGTAGTCCAAGAAAACA 776
Query 768 TGTAGATCTTTCGAGCCGTGGACTATGTCTAATGCCGATCTCAGCTTCATATCCCGTGGC 827
||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 777 TGTAGATCTCGCGAGCCGTGGGCTATGTCTGATGCCGATCTCAGCTTCATATCCGGTGGC 836
Query 828 TGCAGCTGCGGCTTCGGCTGCAGAGATGAACGTACATCTGGTTTCTGGCATCTTCCATTC 887
|||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 837 TGCAGCCGCGGCTTCGGCTGCAGAGATGAACCTACATCTGATTTCTGGAATCTTCCATTC 896
Query 888 TTTGTAA 894
| |||||
Sbjct 897 TGTGTAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5