BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05180.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1 1325 0.0
Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2 442 2e-123
> Ahg490167 jgi|Araly1|490167|fgenesh2_kg.6__3301__AT4G05180.1
Length=893
Score = 1325 bits (717), Expect = 0.0
Identities = 840/898 (94%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 1 GTCACATAACCAAACACCAAAAATTATAACTCAAC-A-CTTCACTAATC-AATTATTCAA 57
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 1 GTCACATAACCAAACACCAAAAATTATAACTCAACAATCTTCACTAATCAAATTATTCAA 60
Query 58 AGCAGATaaaaaaaaaaTGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGAGCATC 117
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AGCAGAT---AAAAAAATGGCTCAAGCAGTGACTTCGATGGCTGGCTTACGTGGCGCATC 117
Query 118 TCAGGCTGTCCTTGAAGGAAGTTTACAGATCAACGGCTCAAACCGTTTGAACATCTCAAG 177
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 118 TCAGGCTGTCCTTGAAGGAAGTCTACAGATCAATGGCTCAAACCGTTTGAACATCTCAAG 177
Query 178 AGTCTCGGTTGGGTCTCAGAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGTGTCAGT 237
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 AGTCACGGTTGGATCTCAAAGAACCGGACTTGTGATCAGGGCTCAGCAGAACGAGTCAGT 237
Query 238 ACCAGAAAGTAGTCGCCGGTCAGTGATTGGACTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297
|||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct 238 ACCAGAAAGTAGTCGCAGGTCAGTGATCGGGCTCGTGGCGGCTGGTTTAGCCGGTGGTTC 297
Query 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTGGTCCTCCACTTCC 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 298 ATTCGTTAAAGCTGTTTTCGCCGAAGCTATTCCGATCAAAGTTGGTCCTCCTCCACCTCC 357
Query 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGACTTTTCATTGGCATT 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 358 TTCCGGTGGCCTACCTGGAACAGATAACTCAGACCAAGCAAGAGATTTTTCATTGGCATT 417
Query 418 GAAAGATAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAAGACAGATTTTACATACAACCATTGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGA 477
Query 478 TTCTGCTAAAGAGATCATCAACGTTAAGTCATTTATCGACAAAAAAGCTTGGCCCTATGT 537
||||||||||||||||| |||||||||||| | |||||||||||||||||||| || ||
Sbjct 478 ATCTGCTAAAGAGATCATTAACGTTAAGTCACTGATCGACAAAAAAGCTTGGCCTTACGT 537
Query 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTCCGTTACGATCTCAACACCGTTATCTC 597
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 538 TCAGAACGATCTCCGTTTAAGAGCATCGTACCTTCGTTACGATCTTAACACCGTTATCTC 597
Query 598 CGCTAAGCCTAAGGAAGAGAAGCA-AAGCCTTAAAGATCTCACCG-CAAAGCTTTTCCAA 655
|||||||||||| |||||||| | || ||||||||| || |||| ||| ||| ||| ||
Sbjct 598 CGCTAAGCCTAAAGAAGAGAAAAAGAA-CCTTAAAGAACTTACCGGCAA-GCTCTTCGAA 655
Query 656 ACCATTGACAACTTGGACTATGCGGCGAGATCAAAGAGTAGCCCAGATGCTGAGAAGTAT 715
||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 656 ACCATCGACAACTTGGACTATGCGGCGAGGTCTAAGAGCAGCCCAGATGCTGAGAAGTAT 715
Query 716 TACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTCGGTTAATGAAGAAAG 775
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 716 TACTCAGAAACTGTCTCGAGTTTGAACAATGTTCTTGCCAAGCTTGGTTAATGAAGAAAG 775
Query 776 ACTTGCGTTGTAATCTGTTGATGTCGATGTTATTATAATTACTGCTATCCAAGTACTTTG 835
| |||| ||||||| ||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 776 ATTTGCTTTGTAATGTGTTGATGTCGATGTTATTATTATTATTACTATCCAAGTACTTTG 835
Query 836 TCTTTCTCCTTCTCTTCTTG-T---CTGATCAAATCGGTTATCTCTAATTTCAGTTTC 889
|||||||||| |||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 836 TCTTTCTCCTCCTCTTCTTAATTATCTGATCAAATCGGTTATTTCTAATTTCAGTTTC 893
> Ahg492755 jgi|Araly1|492755|fgenesh2_kg.7__2188__AT4G21280.2
Length=890
Score = 442 bits (239), Expect = 2e-123
Identities = 550/695 (79%), Gaps = 42/695 (6%)
Strand=Plus/Plus
Query 90 CTTCGATGGCTGGCTTACGTGGAGCATCTCAGGCTGTCCTTGAAGGAAGTTTACAGATCA 149
||||||||| ||| |||| || ||||||| ||| || ||||||||||| ||| ||||||
Sbjct 42 CTTCGATGGGTGGATTACACGGTGCATCTCCGGCGGTTCTTGAAGGAAGCTTAAAGATCA 101
Query 150 ACGGCTCAAACCGTTTGAACAT--CT-CAAGAGTCTCGGTTGGGTCTCAGAGAACCGGAC 206
| ||||| | |||| |||| | || |||||| ||| | || |||| || | |||
Sbjct 102 ATGGCTCGAGCCGTCTGAATGTCCCTGGAAGAGTGGCGG-T-GG-CTCAAAGGTCTAGAC 158
Query 207 TTGTGATCAGGGCTCAGCAGAACGTGTCAGTACCAGAAAGTAGTCGCCGGTCAGTGATTG 266
||||| |||| ||||||||| | || | | ||| | | ||| ||||| |||||||
Sbjct 159 TTGTGGTCAGAGCTCAGCAG---G-GT--G-A--AGAGACTTCTCGTCGGTCTGTGATTG 209
Query 267 GACTCGTGGCGGCTGGTTTAGCCGGTGGTTCATTCGTTAAAGCTGTTTTCGCCGAAGCTA 326
| |||||||| ||||| ||||||||||| || || ||| | ||||| ||||||| |||
Sbjct 210 GGCTCGTGGCTGCTGGATTAGCCGGTGGCTCGTTTGTTCAGGCTGTCCTCGCCGATGCTG 269
Query 327 TTCCGATCAAAGTTGGTGGTCCTCCACTTCCTTCCGGTGGCC-T--ACCTGGAACAGATA 383
||||||||||||||||| |||||||| |||||||||||||| | | |||| ||||| |
Sbjct 270 TTCCGATCAAAGTTGGTCCTCCTCCACCTCCTTCCGGTGGCCTTCCAGCTGGGACAGAGA 329
Query 384 ACTCAGACCAAGCAAGAGACTTTTCATTGGCATTGAAAGATAGATTTTACATACAACCAT 443
||||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||
Sbjct 330 ACTCAGACCAAGCAAGAGACTTTGAATTGGCATTGAAAGACAGGTTTTACTTACAGCCAT 389
Query 444 TGTCACCAACAGAAGCTGCAGCTAGAGCCAAAGATTCTGCTAAAG-AGATCATCAACGTT 502
|| ||||||||||||||||||||||||||||||| ||||| |||| | ||||| || ||
Sbjct 390 TGCCACCAACAGAAGCTGCAGCTAGAGCCAAAGAATCTGC-AAAGGATATCATAAATGTG 448
Query 503 AAGTCATTTATCGACAAAAAAGCTTGGCCCTATGTTCAGAACGATCTCCGTTT-AAGAGC 561
||| |||| ||||||| ||||||||||| |||||||| ||||||||||||| ||| ||
Sbjct 449 AAGCCATTGATCGACAGGAAAGCTTGGCCATATGTTCAAAACGATCTCCGTTCCAAG-GC 507
Query 562 ATCGTACCTCCGTTACGATCTCAACACCGTTATCTCCGCTAAGCCTAAGGAAGAGAAGCA 621
|| || || ||||| || || ||||| | || ||| | || || ||||| |||||| |
Sbjct 508 TTCTTATCTTCGTTATGACCTTAACACAATCATTTCCTCCAAACCCAAGGACGAGAAG-A 566
Query 622 AAG-CCTTAAAG-ATCTCACCGCAAAGCTTTTCCAAACCATTGACAA-CTTGGACTATGC 678
| | || ||||| | |||||| | ||||| ||| | ||||| ||||| || ||| |||||
Sbjct 567 A-GTCCCTAAAGGAGCTCACCACCAAGCTCTTCGATACCATCGACAATCT-GGATTATGC 624
Query 679 GGCGA-GATCAAAGAGTAGC--C-CAGATGCTGAGAAGTATTACT-CAGAAACTGTCTC- 732
||||| || || |||| | | ||| ||||||||||| || | | || || |||||
Sbjct 625 GGCGAAGAAGAA-GAGTC-CTTCGCAG--GCTGAGAAGTACTA-TGCTGAGACAGTCTCT 679
Query 733 GAGTTTGAAC-AATGTTCTTGCCAAGCTCGGTTAA 766
| ||||||| || |||||||||||||| ||||||
Sbjct 680 GC-TTTGAACGAA-GTTCTTGCCAAGCTTGGTTAA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5