BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05190.1
Length=3132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1 3871 0.0
Ahg946067 jgi|Araly1|946067|scaffold_702296.1 2156 0.0
> Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1
Length=3018
Score = 3871 bits (2096), Expect = 0.0
Identities = 2429/2589 (94%), Gaps = 25/2589 (1%)
Strand=Plus/Plus
Query 205 TTGACGAGCCTAAGGTGAAGCAATCCATCGAAGATGCCACTTCGCAACCAGAATCGCGCT 264
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 127 TTGACGAGCATAAGGTGAAGAAATCCATCGAAGATGCCGCTTCGCAACCAGAATCGCGCT 186
Query 265 CCTTTACCTAGTCCAAACGTCAAAAAGGAAGCGCTCTCAAGTATTCCTTTTGACAAGCGA 324
||||| |||||||||||||||||||||||||| || ||||| | || ||||
Sbjct 187 CCTTTGCCTAGTCCAAACGTCAAAAAGGAAGCTCTTTCAAG-A------AGGA-AAGC-- 236
Query 325 AGGAAGGAGACGCAAGGTACTGGAAGAAGACAAGTGCTTTCGACAGTGAACAGAC-A-A- 381
|| | | ||||||| ||| ||||||||||||||| |||||||||||||||||| | |
Sbjct 237 -GG-A--A-ACGCAAGTTACCGGAAGAAGACAAGTGTTTTCGACAGTGAACAGACAAGAT 291
Query 382 G--A-TGCGAACAGCGATGTGGGAAGCACAGAGGAGTGTGGTAAAGTTGAGTTTACAAAA 438
| | |||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 292 GTTACTGCGAACAGCGATGTGGGCAGTACAGAGGAGTGTGGTAAAGTTGAATTTACAAAA 351
Query 439 GATGAAGTGTTGGCTTTGCTTAACGAGAGAGCTAAAGCTGGAAAATTTGATACCAAGGGT 498
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GATGAAGTCTTGGCTTTGCTTAACGAGAGAGCTAAAGCTGGAAAATTTGATACCAAGGGT 411
Query 499 AAGATTGAGCAAATGACGGATATTATCAAGAAGCTTAAGGTCTGTGTTAGATGGTACCAA 558
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 412 AAGATTGAGCAAATGACGGATATTATCAAGAAGCTTAAGGTTTGTGTTAGATGGTTCCAA 471
Query 559 CAAGTGGATGAAACTCATGTTCAAGACAAGGAAAATCTTTCTTCTTCTCTTCAATCTGCA 618
|||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 472 CAAGTGGACGAAACTCATGTTCAGGAGAAGGAAAATCTTTGTTCTTCTCTTCAATCTGCA 531
Query 619 GAGAAAAGATACAGTGATAAAGAGTTGGATGCAAAGACCAAAGAGGAAGAGCTACGAGCA 678
|||||||||||| ||||||||||||||||||| |||||||| ||||||| ||||| ||||
Sbjct 532 GAGAAAAGATACTGTGATAAAGAGTTGGATGCGAAGACCAACGAGGAAGTGCTACAAGCA 591
Query 679 ACTATAACAGAGATGAAGGAGAACATAGAATCACTTCAGGAAAAGCTGTCCAAGGAGAAG 738
|||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||| ||
Sbjct 592 ACTATAGCAGAGATGAAGGAGAAAATAGCATCACTTCAGGAAAAGTTGTCCAAGGAGGAG 651
Query 739 TTGAGTAAACTGGATGCAATTGAAAATCACAGAAGAGAAAAAGATTGTAGAGTTGTAGCT 798
||||||||| |||| |||||||||||| |||||||||||||||| ||||||| || ||||
Sbjct 652 TTGAGTAAATTGGAAGCAATTGAAAATTACAGAAGAGAAAAAGAATGTAGAGATGCAGCT 711
Query 799 GAGAAGCTTCAGGTTTCTCTCA-GAGAAGAGCTTGACAAAGTTAAAGAGGAAAAAATGGC 857
||||||||||| |||||||| | |||| |||||||||||||||| ||| || ||||||||
Sbjct 712 GAGAAGCTTCAAGTTTCTCT-ACGAGATGAGCTTGACAAAGTTACAGAAGAGAAAATGGC 770
Query 858 TGCGAAGCAGAAGGTGACGTCTCTAGAAGATATGTACAAGAGGCTGCAAGAGTACAACAC 917
|||||| |||||||||| ||| || |||||||||||||| ||||||||||||||||||||
Sbjct 771 TGCGAAACAGAAGGTGATGTCCCTTGAAGATATGTACAAAAGGCTGCAAGAGTACAACAC 830
Query 918 AAGTTTGCAACAATATAACACCAAACTCCAGACTGATCTTGAAGTAGCTAGAGAGGCTCA 977
|||| |||||||||||||||| |||||||||||||||||||||| || | ||||||| ||
Sbjct 831 AAGTCTGCAACAATATAACACAAAACTCCAGACTGATCTTGAAGCAGTTCGAGAGGCGCA 890
Query 978 CACTCGTGCTGAAAAAGAAAAGTCAAGTATACTGGAGAATCTTACTACACTAAGAGGTCA 1037
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 891 TACTCGTGCTGAAAAGGAAAAGTCAAGTATACTGGAGAATCTTACTACCCTAAGAGGTCA 950
Query 1038 CAGTAAATCACTACAAGATCAATTAGCATCGAGCCGGGTTTCACAAGATGAAGCGGTAAA 1097
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 951 CAGTAAATCACTACAAGATCAATTAGCATTGAGCCGGGTTTCACAAGATGAAGCGGTAAA 1010
Query 1098 ACAAAAGGATTCATTGCTGATGGAAGTTAATAACCTTCAAAGCGAGCTGCAACAAGTCCG 1157
||||||||| |||||| |||||||||| || ||||||| || ||||| |||||||||||
Sbjct 1011 ACAAAAGGAGTCATTGTTGATGGAAGTCAACAACCTTCGGAGTGAGCTCCAACAAGTCCG 1070
Query 1158 TGATGATCGTGATCGCCATGTTGTACAGTCACAAAAGCTGGCTGGTGAGATACTGATGTA 1217
|||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1071 TGATGATCGTGATCGCCAGGTTGTACAGTCGCAAAAGCTGGCTGATGAGATACTGATGTA 1130
Query 1218 TAAGGAGAGTGTTGGAAAGTCATCTCATGAGTTGGACATTCTTATAGCCAAATCAGGATC 1277
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1131 TAAGGAGAGTGTTGGAAAGTCATCTCATGAGTTGGACATTCTGATTGCAAAATCAGGATC 1190
Query 1278 TTTAGAGGAAACATGTTCGTTGCAAAAAGAGCGTATTAAAATGTTGGAGCAGGAATTAGC 1337
||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1191 TTTGGAGGAAACATGTTCGTTACAAAAGGAGCGTATAAAAATGTTGGAGCAGGAATTAGC 1250
Query 1338 TTTTGCTAAGGAAAAGCTTAAGATGGTGGATTTATCTATGTCTCATACAATGACAGAATT 1397
||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||
Sbjct 1251 TTTTGCTAAGGAAAAGCTTAAGATGGTAGATGCATCTATGTCTCATACTATGACAGAGTT 1310
Query 1398 TGAGGAGCAGAAACAATGTATGCATGAACTGCAAGATCGCCTTGCAGACACGGAGCGTCA 1457
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1311 TGAGGAGCAGAAACAACACGTGCATGAACTGCAAGATCGCCTTGCAGATACGGAGCGTCA 1370
Query 1458 ACTTTTTGAAGGAGAGTTATTAAGGAAAAAGCTTCATAACACCATTCTTGAACTCAAAGG 1517
||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1371 ACTTTATGAAGGAGAGTTGTTACGGAAGAAGCTTCATAACACCATTCTTGAACTCAAAGG 1430
Query 1518 AAACATACGCGTGTTCTGCCGAGTGCGCCCCTTGCTACCAGATGATGGAGGACGCCAAGA 1577
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 AAACATACGCGTGTTCTGCCGAGTGCGCCCATTGCTACCAGATGATGGAGGACGCCAAGA 1490
Query 1578 GGCCAGTGTTATTGCCTATCCTACATCAACTGAATCTCTTGGTAGAGGCATTGATGTGGT 1637
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1491 GGCCAGCGTTATTGCCTATCCCACATCAACTGAATCTCTTGGTAGAGGCATTGATGTTGT 1550
Query 1638 CCAAAGTGGTAACAAACATCCTTTCACTTTCGACAAGGTCTTCGACCACGGAGCTTCTCA 1697
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1551 CCAAAGTGGTAACAAGCATCCTTTCACCTTCGACAAGGTCTTCGACCATGGAGCTTCTCA 1610
Query 1698 GGAGGAAGTATTCTTTGAAATATCTCAACTTGTGCAGAGCGCATTGGATGGCTACAAGGT 1757
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1611 GGAGGAAGTATTCTTTGAAATATCTCAACTTGTGCAGAGCGCATTAGATGGCTACAAGGT 1670
Query 1758 TTGTATTTTTGCCTACGGTCAGACAGGTTCTGGCAAAACCTATACCATGATGGGCAGGCC 1817
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1671 TTGTATTTTTGCCTACGGTCAGACAGGTTCTGGCAAAACCTACACAATGATGGGCAGGCC 1730
Query 1818 TGAAACACCAGAACAGAAAGGACTGATCCCTCGATCACTCGAACAAATATTCAAAACCAG 1877
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1731 TGAAACACCAGAACAGAAAGGACTGATCCCTCGATCACTTGAACAAATATTCAAAACCAG 1790
Query 1878 CCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAGGTCTCAATGTTGGAGATATA 1937
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1791 CCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAGGTATCCATGTTGGAGATATA 1850
Query 1938 TAATGAGTCCATCAGAGACTTGTTGTCTACAAGCCGAACGATTGCTATAGAATCTGTGCG 1997
||| ||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1851 TAACGAGTCCATCAGGGATTTGTTGTCTACAAACCGAACAATTGCTATAGAATCTGTGCG 1910
Query 1998 GGCAGACAGTAGCACATCTGGAAGACAATATACAATCACACATGATGTTAATGGAAACAC 2057
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 AGCAGACAGTAGCACCTCTGGAAGACAATATACAATCACACATGATGTTAATGGAAACAC 1970
Query 2058 TCATGTTAGCGACCTGACAATAGTAGATGTATGCAGCATTGGACAAATTTCCTCACTT-T 2116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1971 TCATGTTAGTGACCTGACAATAGTAGATGTATGCAGCATTGGACAAATTTCCTCA-TTAT 2029
Query 2117 TGCAACAAGCTGCTCAGAGCAGGTCTGTTGGGAAGACGCATATGAATGAACAATCATCAA 2176
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2030 TGCAACAGGCTGCTCAGAGCAGGTCTGTTGGTAAGACCCATATGAATGAACAATCATCAA 2089
Query 2177 GAAGTCATTTCGTGTTTACTCTTAGGATTTCTGGTGTGAATGAGAGCACTGAACAGCAAG 2236
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2090 GAAGTCATTTTGTGTTTACTCTTAGGATTTCTGGTGTGAATGAGAGCACTGAACAGCAGG 2149
Query 2237 TACAAGGTGTTCTTAACCTAATTGATCTTGCTGGAAGTGAGCGACTTTCAAGGAGCGGGG 2296
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2150 TACAAGGTGTTCTTAACCTAATTGATCTTGCTGGAAGTGAGCGACTTTCAAGAAGCGGGG 2209
Query 2297 CAACCGGAGACCGGTTAAAGGAGACACAGGCTATAAACAAAAGCTTGTCTGCATTGAGTG 2356
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2210 CAACCGGAGACCGATTAAAGGAGACACAGGCTATAAACAAAAGTTTGTCTGCTTTGAGTG 2269
Query 2357 ATGTTATATTTGCATTGGCAAAGAAAGAGGATCATGTACCTTTCAGAAACTCAAAGTTAA 2416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 ATGTTATATTTGCATTGGCAAAGAAAGAGGATCATGTACCTTTCAGAAACTCAAAGTTAA 2329
Query 2417 CATATCTGCTCCAGCCATGTTTAGGAGGGGACTCAAAGACCTTAATGTTTGTGAACATAT 2476
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 2330 CATATCTGCTCCAGCCATGTTTAGGAGGTGACTCAAAGACCTTAATGTTTGTTAACATAT 2389
Query 2477 CACCTGATCCATCTTCAACTGGAGAGTCTCTATGCTCTCTTCGGTTTGCTGCTAGAGTTA 2536
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
Sbjct 2390 CACCTGATCCATCTTCAACTGGAGAGTCTCTTTGCTCACTCCGGTTTGCTGCTAGAGTGA 2449
Query 2537 ATGCATGTGAGATTGGAATACCTCGCAGACAAACTTCCGCAAAACTCCTCGACTCTCGCC 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2450 ATGCATGTGAGATTGGAATACCTCGCAGACAAACTTCCGCAAAACTCCTCGACTCTCGCC 2509
Query 2597 TAAGTTACGGTTAACACTGGTGGTTCGAGTCTCTCTTTCATCTGTATAACAACAACAACA 2656
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2510 TAAGTTACGGTTAAAACTGGTGGTTCGAGTCCCTCTTTCATCTGTATAACAACAACAACA 2569
Query 2657 TTTGTTTTAGAGTTACAAGTTACAACATAACATTACTGGAACTAATTGTTGAAGTCAACG 2716
||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2570 ATTGTTTTAGAGGTACAAGTTACAACATAACATTAGTGGAACTAATTGGGGAAGTCAACG 2629
Query 2717 AGGATAAACTATAGTGATGGAAGAATCGTCAACAGACAAAGGCAAAGACTTGCTTGTTGC 2776
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 AGGATGAACAATAGTGATGGAAGAATCGTCAACAGACAAAGGCAAAGACTTGCTTGTTGC 2689
Query 2777 AGAGTGATC 2785
||| |||||
Sbjct 2690 AGATTGATC 2698
Score = 455 bits (246), Expect = 1e-126
Identities = 300/326 (92%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 2809 GATCTCTAGAGTCTTTCATGGTTCGAAGAAGAAACCCAGATCGCTTTGGAATCGGTAAAG 2868
||||| |||| ||| ||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 2695 GATCTTTAGAATCTCTCATGTTTTGAAGAAGAAACCCAGATCGCTTTGGAATTGGTAAAG 2754
Query 2869 TAACAGTGAAGCTGTTCATCATCACAAGAATGTCATCCATTGAAGGTCTCTCTGAAGAAT 2928
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2755 TAACAGTGAAGCTGTTCATCATCACAAGAATGTTATCCATTGAAGGTCTCTCTGAAGAAT 2814
Query 2929 CTTCTTGAACACATAACAAAGCAATGTGAATGCATCTGATCACTTCATTTGTCTGAAAAT 2988
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2815 CATCTTGAACACATAACAGTGCAATGTGAATGCATCTGATCACTTCATTTGTCTGAAAAT 2874
Query 2989 TCCCTCTCATTGCTTCATCTACTAGCTCCAGTGGTGAATTCTCCACCCATAGCTTCCACA 3048
|||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 2875 TCCCTCTCATTGTTTCATCTACTAGCTCCAATGGGGAATTCTCTACCCATAGCTTCCACA 2934
Query 3049 CCTGCAGATATTTATAATGTTTCAGAAAACAGTATTTAAAAAG-A-GTTTTTGATTGGTT 3106
|||||| || |||| |||||||| |||||||||| ||||||| | |||||||| |||||
Sbjct 2935 CCTGCAAATTTTTAGAATGTTTCTGAAAACAGTACTTAAAAAATAAGTTTTTGAATGGTT 2994
Query 3107 ATAAAACAGTACTTACGTAGGTCACT 3132
||||| | |||||||||||||||||
Sbjct 2995 ATAAAT-A-TACTTACGTAGGTCACT 3018
Score = 93.5 bits (50), Expect = 9e-18
Identities = 57/60 (95%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 1 AAGAGTCCGCCGATCTGTTTTCAAATATTCAAACAACAGGCTCCTCCTTCTTCCTTCCTC 60
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1 AAGAGTCCGCCGATCTGTTTTCAAATATTCAAATAACAGGCTCCTCCTCCT-CCTTCCTC 59
> Ahg946067 jgi|Araly1|946067|scaffold_702296.1
Length=2419
Score = 2156 bits (1167), Expect = 0.0
Identities = 1986/2379 (83%), Gaps = 65/2379 (3%)
Strand=Plus/Plus
Query 274 AGTCCAAACGTC-AAAAAGGAAGCGCTCTCAAGT---ATTCCTTTTGACAAGCGAAGG-A 328
|||||||||| | |||||||||| | |||| || ||||| ||||||||||||||| |
Sbjct 54 AGTCCAAACG-CTAAAAAGGAAG-G-TCTC-GGTGGCATTCCATTTGACAAGCGAAGGAA 109
Query 329 A--GGAGACGCAAGGTACTGGAAGAAGACAAGTGCTTTCGACAGTGAACAGACAAGATG- 385
| ||| |||||||| ||||| |||||||||| | ||||| | ||||||| ||||||||
Sbjct 110 AGTGGAAACGCAAGGGACTGGGAGAAGACAAGCGTTTTCGGCTGTGAACAAACAAGATGT 169
Query 386 --C---GAACAGCGATGTGGGAAGCACAGAGGAGTGTGGTAAAGTTGAGTTTACAAAAGA 440
| ||||||||||||||| |||| ||| || |||||||||||||||||| |||||||
Sbjct 170 CACGATGAACAGCGATGTGGGGAGCATAGAAGAATGTGGTAAAGTTGAGTTTTCAAAAGA 229
Query 441 TGAAGTGTTGGCTTTGCTTAACGAGAGAGCTAAAGCTGGAAAATTTGATACCAAGGGTAA 500
|||||| ||||| ||||| | |||||||| ||||||||||| |||||||| |||| |||
Sbjct 230 TGAAGTATTGGCGTTGCTCAGTGAGAGAGCAAAAGCTGGAAAGTTTGATACAAAGGCTAA 289
Query 501 GATTGAGCAAATGACGGATATTATCAAGAAGCTTAAGGTCTGTGTTAGATGGTACCAACA 560
||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||| |||||
Sbjct 290 GATTGAGCAAATGACGGATATTATCAAGAGGCTGAAGGTTTGTGTTAAATGGTTTCAACA 349
Query 561 AG-TGGATGAAACTCATGTTCAAGACAAGGAAAATCTT--TCTTCTTCTCTT-CAATCTG 616
|| | |||||||| ||||| ||||| ||||||| | || | |||| || ||||||
Sbjct 350 AGCT-GATGAAACCCATGTCCAAGAGAAGGAAAGT-TTGAGGGT-TTCT-TTGGAATCTG 405
Query 617 CAG-AGAAAAGATACAGTGATAAAGAGTTGGATGCAAAGACCAAAGAGGAAGAGCTACGA 675
| | | |||| ||||| | ||||||||||| || | ||| |||||||||||||||| |
Sbjct 406 CGGAACAAAA-ATACAACCACAAAGAGTTGGAGGCTAGGACAAAAGAGGAAGAGCTAC-A 463
Query 676 -GCAACTATAACAGAGATGAAGGAGAACATAGAATCACTTCAGGAAAAGC-TGTCCAAGG 733
|| |||||| || | |||| ||||| ||| ||||| || ||||||| || | || |
Sbjct 464 TGCCACTATATCAAATTTGAAAGAGAATGTAGTGTCACTACATGAAAAGCTTG-CAAAAG 522
Query 734 AGAAGT-TGAGTAAACTGGATGCAATTGAAAATCACAGAAGAGAAAAAGATTGTAGAGTT 792
|| ||| | |||||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct 523 AGGAGTCT-TGTAAACAGGATGCCATTGAATGTCACAGAAGAGAAAAAGATTCTAGAGTT 581
Query 793 GTAGCTGAG-AAGCTTCAGGTTTCTCTCAGAGAAGAGCTTGACAAAGTTAAAGAGGAAAA 851
| ||||||| ||| | |||| |||||| ||||||| ||||| ||||||||||| || ||
Sbjct 582 GCAGCTGAGAAAG-TGCAGGCTTCTCTTGGAGAAGAACTTGATAAAGTTAAAGAAGAGAA 640
Query 852 AATGGCTGCGAAGCAGAAGGTGACGTCTCTAGAAGATATGTACAAGAGGCTGCAAGAGTA 911
||||||||| ||||||||||||||||| || || ||||||||||| ||||| ||||||||
Sbjct 641 AATGGCTGCCAAGCAGAAGGTGACGTCACTTGAGGATATGTACAAAAGGCTACAAGAGTA 700
Query 912 CAACACAAGTTTGCAACAATATAACACCAAACTCCAGACTGATCTTGAAGTAGCTAGAGA 971
|||||||||||||||||||||||||| |||||||||||||||||||||| || | |||
Sbjct 701 CAACACAAGTTTGCAACAATATAACAGCAAACTCCAGACTGATCTTGAAACAGTTCGAGC 760
Query 972 GGCTCACACTCGTGCTGAAAAAGAAAAGTCAAGTATACTGGAGAATCTTACTACACTAAG 1031
|| | ||| |||||||||||||| |||||||| || || |||||||||| |||||||||
Sbjct 761 TGCACTCACACGTGCTGAAAAAGAGAAGTCAAGCATCCTTGAGAATCTTAGTACACTAAG 820
Query 1032 AGGTCACAGTAAATCACTACAAGATCAATTAGCATCGAGCCGGGTTTCACAAGATGAAGC 1091
|||||||| || || || || ||||||||||| || ||| | |||| |||||||| ||
Sbjct 821 GGGTCACAGCAAGTCGCTGCAGGATCAATTAGCTTCAAGCAGAGTTTTGCAAGATGACGC 880
Query 1092 GGTAAAACAAAAGGATTCATTGCTGATGGAAGTTAATAACCTTCA-AAGCGAGCTGCAAC 1150
||||||| |||||||||||||| ||||||||| ||| || | || ||||| ||||
Sbjct 881 TATAAAACAGAAGGATTCATTGCTTTTGGAAGTTACTAATCTCCGGAAT-GAGCTCCAAC 939
Query 1151 AAGTCCGTGATGATCGTGATCGCCATGTTGTACAGTCACAAAAGCTGGCTG-GTGAGATA 1209
|||| | ||||| ||||||||||| ||||| |||||||| |||||||||| | || ||
Sbjct 940 AAGTTAGGGATGACCGTGATCGCCAAGTTGTTCAGTCACAGAAGCTGGCTGAG-GAAAT- 997
Query 1210 CTG-ATGTATAAGGAGAGTGTTGGAAAGTCATCTCATGAGTTGGACATTCTT-ATAGCCA 1267
| | | || |||||| ||| ||||||||||| || ||| | ||||| ||| ||||| |
Sbjct 998 CGGGAAATACCAGGAGAATGTCGGAAAGTCATCGCAAGAGCTAGACAT-CTTGATAGCAA 1056
Query 1268 AATCAGGATCTTTAGAGGAAACATGTTCGTTGCAAAAAGAGCGTATTAAA-ATGTTGGAG 1326
|||||||||| || ||||| ||||||||||||||||| |||||||| ||| ||||| |||
Sbjct 1057 AATCAGGATCGTTGGAGGAGACATGTTCGTTGCAAAAGGAGCGTAT-AAATATGTTAGAG 1115
Query 1327 CAGGAATTAGCTTTTGCTAAG-GAAAAGCTTAAGATGGTGGATTTATCTA-TGTCTCATA 1384
||| ||||||| | || | | |||| || ||||||| ||| ||| | | |||| ||
Sbjct 1116 CAGCAATTAGCAATCGCCA-GTGAAAGGCAAAAGATGGCAGATGCATC-AGTATCTCTTA 1173
Query 1385 CAATGA-CAGAATTTGAGGAGCAGAAACAATGTA-TGCATGAACTGCAAGATCGCCTTGC 1442
| | || |||| |||||||||||||| || | || || |||||| ||||| ||||||||
Sbjct 1174 CTA-GAACAGAGTTTGAGGAGCAGAAGCA-TCTACTGTGTGAACTACAAGACCGCCTTGC 1231
Query 1443 AGACACGGAGCGTCAACTTTTTGAAGG-AGAGTTATTAAGGAAAAAGCTTCATAACACCA 1501
||||| ||||| |||||| | ||| || ||||||||| |||| |||||||||||||| |
Sbjct 1232 AGACATGGAGCATCAACTGTGTGA-GGCAGAGTTATTGCGGAAGAAGCTTCATAACACTA 1290
Query 1502 TTCTTGAACTCAAAGGAAACATACGCGTGTTCTGCCGAGTGCGCCCCTTGCTACCAGATG 1561
|||||||||| |||||||| ||||| || ||||||||||||||||||||| ||||||| |
Sbjct 1291 TTCTTGAACTAAAAGGAAATATACGGGTCTTCTGCCGAGTGCGCCCCTTGTTACCAGACG 1350
Query 1562 ATGGAGGACGCCAAGAGGCCAGTGTTATTGCCTATCCTACATCAACTGAATCTCTTGGTA 1621
|||||||||| || || || | ||| || ||||||||||| ||||| ||| ||| || |
Sbjct 1351 ATGGAGGACGACATGAAGCAACTGTGATAGCCTATCCTACTTCAACAGAAGCTCGAGGAA 1410
Query 1622 GAGGCATTGATGTGGTCCAAAGTGGTAACAAACATCCTTTCAC-TTTCGACAAGGTCTTC 1680
|||| ||||| |||| || ||||| ||||||||||||||||| ||| ||||| || |||
Sbjct 1411 GAGGTGTTGATTTGGTTCAGAGTGGGAACAAACATCCTTTCACCTTT-GACAAAGTTTTC 1469
Query 1681 GACCACGGAGCTTCTCAGGAGGAAGTATTCTTTGAAATATCTCAACTTGTGCAGAGCGCA 1740
| |||| |||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1470 AATCACGAAGCTTCCCAGGAGGAAGTATTCTTTGAAATATCACAACTAGTACAGAGCGCA 1529
Query 1741 TTGGATGGCTACAAGGTTTGTATTTTTGCCTACGGTCAGACAGGTTCTGGCAAAACCTAT 1800
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1530 CTGGATGGCTATAAGGTTTGTATCTTTGCCTACGGTCAGACAGGTTCTGGCAAGACCTAC 1589
Query 1801 ACCATGATGGGCAGGCCTGAAACACCAGAACAGAAAGGACTGATCCCTCGATCACTCGAA 1860
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 1590 ACCATGATGGGCAGGCCTGAGACGCCAGAACAGAAAGGTCTGATCCCTCGATCACTTGAA 1649
Query 1861 CAAATATTCAAAACCAGCCAAAGTCTTAGTACACAAGGCTGGAAATACAAGATGCAGGTC 1920
|| |||||| || |||| ||| ||| || ||||||||||||| ||||| ||||||||
Sbjct 1650 CAGATATTCCAAGCCAGTCAATCTCTCGGTGCACAAGGCTGGAAGTACAAAATGCAGGTA 1709
Query 1921 TCAATGTTGGAGATATATAATGAGTCCATCAGAGACTTGTTGTCTACAAGCCGAACGA-T 1979
|||||||||||||||||||||||| |||||||||| ||| | ||||||| ||||| | |
Sbjct 1710 TCAATGTTGGAGATATATAATGAGACCATCAGAGATTTGCTCTCTACAAATCGAACAACT 1769
Query 1980 TGCTATAGAATCTG-TGCGGGCAGACAGTAGCACATCTGGAA-GACAATATACAATCACA 2037
| |||| || | || |||| ||||||||| |||| || |||| | ||||||||||||||
Sbjct 1770 T-CTATGGAGT-TGGTGCGAGCAGACAGTGGCACCTCAGGAAAG-CAATATACAATCACT 1826
Query 2038 CATGATGTTAATGGAAACACTCATGTTAGCGACCTGACAATAGTAGATGTATGCAGCATT 2097
||||| || |||||| |||| ||||| |||||| |||| ||| | ||||| |||||||||
Sbjct 1827 CATGACGTAAATGGACACACCCATGTCAGCGACTTGACCATATTTGATGTGTGCAGCATT 1886
Query 2098 GGACAA-ATTTCCTCACTTTTGCAACAAGCTGCTCAGAGCAGGTCTGTTGGGAAGACGCA 2156
||| || || |||||||| ||||| || ||||||||||||||||| || |||||||| ||
Sbjct 1887 GGA-AAGATATCCTCACTCTTGCAGCAGGCTGCTCAGAGCAGGTCAGTAGGGAAGACTCA 1945
Query 2157 TATGAATGAACAATCATCAAGAAGTCATTTCGTGTTTACTCTTAGGATTTCTGGTGTGAA 2216
|||||||| |||||||| ||||||||||| ||||||||| | ||||||| ||||| ||
Sbjct 1946 AATGAATGAGCAATCATCCAGAAGTCATTTTGTGTTTACTATGCGGATTTCGGGTGTTAA 2005
Query 2217 TGAGAGCACTGAACAGCAAGTACAAGGTGTTCTTAACCTAATTGATCTTGCTGGAAGTGA 2276
|||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||
Sbjct 2006 TGAGAGCACTGAACAGCAGGTACAAGGGGTTCTCAACCTAATCGATCTTGCTGGAAGTGA 2065
Query 2277 GCGACTTTCAAGGAGCGGGGCAACCGGAGACCGGTTAAAGGAGACACAGGCTATAAACAA 2336
| | || |||| ||| |||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 2066 GAGGCTATCAAAGAGTGGGGCAACTGGAGATCGATTAAAAGAGACACAGGCTATAAACAA 2125
Query 2337 AAGCTTGTCTGCATTGAGTGATGTTATATTTGCATTGGCAAAGAAAGAGGATCATGTACC 2396
||| || || || |||||||||||||| ||||||||||| |||||||| |||||||| ||
Sbjct 2126 AAGTTTATCAGCTTTGAGTGATGTTATCTTTGCATTGGCTAAGAAAGAAGATCATGTTCC 2185
Query 2397 TTTCAGAAACTCAAAGTTAACATATCTGCTCCAGCCATGTTTAGGAGGGGACTCAAAGAC 2456
|||||||||||||||| ||||||||||||| ||||| || ||||||| || || |||||
Sbjct 2186 TTTCAGAAACTCAAAGCTAACATATCTGCTTCAGCCTTGCCTAGGAGGAGATTCGAAGAC 2245
Query 2457 CTTAATGTTTGTGAACATATCACCTGATCCATCTTCAACTGGAGAGTCTCTATGCTCTCT 2516
||| ||||| || ||||| || ||||| |||||||| ||||||||||||| ||||||||
Sbjct 2246 CTTGATGTTCGTAAACATTTCGCCTGACCCATCTTCCGCTGGAGAGTCTCTTTGCTCTCT 2305
Query 2517 TCGGTTTGCTGCTAGAGTTAATGCATGTGAGATTGGAATACCTCGCAGACAAACTTCCGC 2576
||||||||||||||||| ||||| ||||| ||||| |||||| | ||||||||||| |
Sbjct 2306 CCGGTTTGCTGCTAGAGTGAATGCGTGTGAAATTGGTATACCTAGGAGACAAACTTCAAC 2365
Query 2577 AAAACTCCTCGACTCTCGCCTAAGTTACGGTTAACACTG 2615
||| ||||| ||||||||| | || || || ||| ||||
Sbjct 2366 AAAGCTCCTTGACTCTCGCTTGAGCTATGGCTAAAACTG 2404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118308300970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5