BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05200.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943302 jgi|Araly1|943302|scaffold_603846.1 1315 0.0
Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1 368 9e-101
> Ahg943302 jgi|Araly1|943302|scaffold_603846.1
Length=1063
Score = 1315 bits (712), Expect = 0.0
Identities = 891/976 (91%), Gaps = 18/976 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTGTTTCAAATCCTCTGTTTCTCTGTTCTCAGTTTTCTTGTTTATGATCTTG 60
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 21 ATGTCTTCTTGTTTCAAATCCTCTGTTTCTCTGATCTCAATTTTCTTCTTTATGATCTT- 79
Query 61 AAGA-CAGTTAC-T-T----CAGATCCAACTTATCTCTACCACATATGTCCAAACACAAC 113
|| | | ||| | | | || |||||| ||||||||||||||||||||||||||| ||
Sbjct 80 AAAAGCTGTTTCTTCTGCAACAAATCCAATTTATCTCTACCACATATGTCCAAACACGAC 139
Query 114 AACGTACTCAAGAAACAGCAGTTACTTAACCAATCTCCGAACTGTTCTTTCATCTCTCTC 173
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 140 AACGTACTCAAGAAACAGCACTTACTTAACCAATCTCCGAACTGTTCTTTCATCTCTCTC 199
Query 174 CTCTCCAAACGCAGCTTATGCATCGCTTTTTGATAACGCAGCCGCTGGTGAAGAGAACGA 233
|||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||| ||
Sbjct 200 CTCTCCAAACGCAGCTTACGCATCGCGTTTCGATAACGCAACCGCTGGTGAAGAGAATGA 259
Query 234 TAGCAACAGAGTCTATGGTGTTTTTCTCTGCCGTGGAGATGTCTCAGCCGAAATCTGCCG 293
|| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 260 TAACAACAGAGTTTATGGTGTTTTCCTCTGCCGTGGAGACGTCTCAGCCGAAATCTGCCG 319
Query 294 TGACTGTGTCGCGTTTGCAGCCAACGAAACGCTCCAAAGGTGTCCAAGAGAGAAAGTGGC 353
||| ||| | |||||||| | |||||||||||| | |||||||||||||||||||||||
Sbjct 320 TGATTGTCTTGCGTTTGCGGTCAACGAAACGCTTTACAGGTGTCCAAGAGAGAAAGTGGC 379
Query 354 AGTGATTTGGTACGATGAGTGTATGGTAAGATACTCTAATCAAAGCATCGTAGGGCAAAT 413
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 380 AGTGATTTGGTACGATGAGTGTATGTTAAGATACTCTAATCAAAGCATCGTTGGGCAAAT 439
Query 414 GAGAATTAGACCTGGTGTTTTCTTGACGAACAAGCAAAACATCACAGAGAATCAAGTGAG 473
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GAGAATTAGACCTGCTGTTTTCTTGACGAACAAGCAAAACATCACAGAGAATCAAGTGAG 499
Query 474 CAGATTCAACGAGTCTTTGCCTGCTCTGCTCATAGATGTTGCGGTGAAAGCCGCTTTGAG 533
||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||
Sbjct 500 CAGATTCAACGAGTCTTTGCCTGCTCTGCTCATCGACGTTGCGGTGAAAGCGGCTTCGAG 559
Query 534 CTCGAGAAAGTTCGCTACGGAGAAAGCCAATTTCACGGTTTTTCAGACAATCTATAGCCT 593
|||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct 560 CTCGAGAAAGTTCGCTACAGAGAAAGCGAATTTCACGGTGTTTCAAACGATTTATAGCCT 619
Query 594 TGTGCAGTGCACTCCGGATTTGACTAATCAAGATTGTGAGAGCTGTTTGAGACAAGTC-A 652
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 620 CGTGCAGTGCACGCCGGATTTGACCAATCAAGATTGTGAGAGCTGTTTGAGACAAG-CGA 678
Query 653 TTAATTACTTGCCGAGATGTTGTGATCGAAGCGTTGGCGGGAGAGTAATCGCTCCGAGTT 712
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 679 TTAATTGGTTGCCTAGATGTTGTGATCGAAGTGTTGGCGGGAGAGTAATCGCTCCGAGTT 738
Query 713 GTAGCTTCAGATATGAGCTTTATCCATTTTACAATGAAACTATAGCTGCGGCTCCGATGG 772
||||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 739 GTAGCTTTAGATATGAGCTTTATCCGTTTTACAATGAAACTATAGCTGAGGCTACGATGG 798
Query 773 CTCCTCCTCCTTCGTCAACGGTGACTGCACCACCACTGAATATTCC-TTCAGAAAAAGGT 831
||||||||| | ||| |||||| |||||||||||||||| | ||| ||||||| ||||
Sbjct 799 CTCCTCCTC-T--GTCTACGGTGGCTGCACCACCACTGAA-ACTCCCTTCAGAAGAAGGG 854
Query 832 AAAGGCAAGAACTTGACAGTTATAGTTACCGCGATCGCTGTACCGGTTTCTGTCTGTGTG 891
||| |||||| || ||| |||| ||| || ||| |||| ||||||||||||||||| |||
Sbjct 855 AAAAGCAAGAGCTCGACGGTTAAAGTAACAGCGGTCGCGGTACCGGTTTCTGTCTGCGTG 914
Query 892 TTACTTCTTGGTGCTATGTGTTGGTTACTAGCAAGAAGAAGGAATAATAAGCTCAGTGCT 951
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 915 TTACTTCTTGGTGCTATGTGTTGGTTACTAGCAAAAAGAAGGAATAA-A--CTCAGTGCT 971
Query 952 GAAACAGAGGATTTAG 967
||||||||||||||||
Sbjct 972 GAAACAGAGGATTTAG 987
> Ahg490168 jgi|Araly1|490168|fgenesh2_kg.6__3302__AT4G05190.1
Length=3018
Score = 368 bits (199), Expect = 9e-101
Identities = 227/241 (94%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1690 GTGTGGAAGCTATGGGTGGAGAATTCACCACTGGAGCTAGTAGATGAAGCAATGAGAGGG 1749
||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 2935 GTGTGGAAGCTATGGGTAGAGAATTCCCCATTGGAGCTAGTAGATGAAACAATGAGAGGG 2876
Query 1750 AATTTTCAGACAAATGAAGTGATCAGATGCATTCACATTGCTTTGTTATGTGTTCAAGAA 1809
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2875 AATTTTCAGACAAATGAAGTGATCAGATGCATTCACATTGCACTGTTATGTGTTCAAGAT 2816
Query 1810 GATTCTTCAGAGAGACCTTCAATGGATGACATTCTTGTGATGATGAACAGCTTCACTGTT 1869
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2815 GATTCTTCAGAGAGACCTTCAATGGATAACATTCTTGTGATGATGAACAGCTTCACTGTT 2756
Query 1870 ACTTTACCGATTCCAAAGCGATCTGGGTTTCTTCTTCGAACCATGAAAGACTCTAGAGAT 1929
|||||||| |||||||||||||||||||||||||||| || ||||| ||| |||| ||||
Sbjct 2755 ACTTTACCAATTCCAAAGCGATCTGGGTTTCTTCTTCAAAACATGAGAGATTCTAAAGAT 2696
Query 1930 C 1930
|
Sbjct 2695 C 2695
Score = 182 bits (98), Expect = 1e-44
Identities = 110/116 (95%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1954 GATCACTCTGCAACAAGCAAGTCTTTGCCTTTGTCTGTTGACGATTCTTCCATCACTATA 2013
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2698 GATCAATCTGCAACAAGCAAGTCTTTGCCTTTGTCTGTTGACGATTCTTCCATCACTATT 2639
Query 2014 GTTTATCCTCGTTGACTTCAACAATTAGTTCCAGTAATGTTATGTTGTAACTTGTA 2069
||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2638 GTTCATCCTCGTTGACTTCCCCAATTAGTTCCACTAATGTTATGTTGTAACTTGTA 2583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5