BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05210.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327448 jgi|Araly1|327448|fgenesh1_pm.C_scaffold_6002668 974 0.0
Ahg329479 jgi|Araly1|329479|fgenesh1_pm.C_scaffold_7001706 564 5e-160
> Ahg327448 jgi|Araly1|327448|fgenesh1_pm.C_scaffold_6002668
Length=849
Score = 974 bits (527), Expect = 0.0
Identities = 617/660 (93%), Gaps = 7/660 (1%)
Strand=Plus/Plus
Query 196 GATCTATTAGAGACAAGTAGTGGAGGTAATGTTGAGAAAGGTTTTCTAAGATGGCGAAAC 255
||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 152 GAT-TATTAGAGACAAGTAGTGGAGGTAATGTTGACAAAGGGTTTCTAAGATGGCGAAAT 210
Query 256 GGAGGAGGAATGTACCATCGTTCGGCC-CTAATTGATTCCTCGGCTCTGGTTGAGTTTGG 314
|||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct 211 GGAGGAGGAATGTACCATAGCTCGGCCGC-AATTGATTCCTCGGCTCTGGTTGAGTTTGG 269
Query 315 AGCAGTGGTTCACCAAG-AAGCTATATTGGGAGCAGAGGTTCATATAGGATCCAACACTG 373
|||||||||||| | || ||||||||||||| |||||||| ||||||||| |||||||
Sbjct 270 AGCAGTGGTTCA-CGAGAAAGCTATATTGGGTCCAGAGGTTTGTATAGGATCTAACACTG 328
Query 374 TAATTGGATCATCAGTCAAAATTGGCCCTTCTACAAAGATCGGCAATTGTAGTATTGGTG 433
|| ||||| |||||||| | || || |||||||||||||||||||||||||||||||||
Sbjct 329 TAGTTGGACCATCAGTCGAGATCGGTTCTTCTACAAAGATCGGCAATTGTAGTATTGGTG 388
Query 434 ATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTTTACGTGG 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ATTTATGTGTCATCCATAATGGAGTCTGCATTGGTCAAGATGGATTTGGGTTTTACGTGG 448
Query 494 ATGA-CAACGGAAACATGGTGAAGAAGCCTCAAACTTTAAATGTGAAGATAGGGAATCGT 552
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 449 ATGAACA-CGGAAACATGGTGAAGAAGCCCCAAACTTTAAATGTGAAGATAGGGAATCGT 507
Query 553 GTGGAAATCGGAGCAAACACATGCATTGATCGGGGCAGCTGGAGAGATACCGTGATCGGG 612
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 508 GTAGAAATCGGAGCAAATACATGCATTGACCGGGGCAGCTGGAGAGATACCGTGATCGGG 567
Query 613 GATGATACTAAGATAGACAACTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAATGT 672
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 568 GATGACACTAAGATAGACAATTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAGTGT 627
Query 673 TGCTTGTTCTGTGGCCAAGTAGGCATAGCTGGATCAGCAGAGATTGGTGACTTTGTAGCA 732
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 628 TGCTTGCTCTGTGGCCAAGTAGGCATAGCTGGATCAGCAGAGATTGGTGACTATGTAACA 687
Query 733 CTAGGAGGACGAGTAGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCT 792
|||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 688 TTAGGAGGACGGGTTGCTGTTCGAGACCATGTCTCCATTGTATCTAAGGTTCGACTTGCT 747
Query 793 GCTAATAGTTGTGTTACTAAAAACATTACGGAACCAGGGGATTACGGCGGTTTTCCTGCT 852
||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 748 GCTAATAGTTGTGTTACTAAAAACATTACCGAACCAGGGGATTTTGGCGGCTTTCCTGCT 807
> Ahg329479 jgi|Araly1|329479|fgenesh1_pm.C_scaffold_7001706
Length=912
Score = 564 bits (305), Expect = 5e-160
Identities = 540/648 (83%), Gaps = 38/648 (6%)
Strand=Plus/Plus
Query 233 AAGGTTTTCTAAGATGGCGAAACGGAGGA-GGA-ATGTACCATCGTTCGGCCCTAATTGA 290
|||| |||||||||||| |||| |||||| ||| |||| ||| | ||||| ||||||||
Sbjct 209 AAGGGTTTCTAAGATGGAGAAATGGAGGAGGGACATGT--CATAGCTCGGCTCTAATTGA 266
Query 291 TTCCTCGGCTCTGGTTGAGTTTGGAGCAGTGGTTCACCAAGAAGCTATATTGGGAGCAGA 350
||| || ||| ||||||||||||| || || ||||| || ||||| | || || || ||
Sbjct 267 TTCTTCAGCTTTGGTTGAGTTTGGTGCGGTAGTTCATGAAAAAGCTGTCTTAGGTGCGGA 326
Query 351 GGTTCATATAGGATCCAACACTGTAATTGGATCATCAG-TCAAAATTGGCCCTTCTAC-A 408
||||||| |||||||| |||||||||||| |||||| || |||| | ||||| || |
Sbjct 327 GGTTCATGTAGGATCCGGGACTGTAATTGGACCATCAGTTC-AAATCAGTCCTTCCACAA 385
Query 409 -AA---G--AT--CG---------GCAATTGTAGTATTGGTGATT-TATGTGTCATCCAT 450
|| | || || |||| |||||||||||||||| | ||||| |||||
Sbjct 386 GAATCGGATATAACGTTTCAATCAGCAACTGTAGTATTGGTGATTCT-TGTGTTATCCAC 444
Query 451 AATGGAGTCTGCATTGGTCAAGATGGATTT-GGGTTTTACGTGGATG-ACAACGGAAACA 508
|||||||||||||| ||||||||||| ||| || |||||||| |||| || | |||||||
Sbjct 445 AATGGAGTCTGCATAGGTCAAGATGG-TTTCGGTTTTTACGTTGATGAAC-ATGGAAACA 502
Query 509 TGGTGAAGAAGCCTCAAACTTTAAATGTGAAGATAGGGAATCGTGTGGAAATCGGAGCAA 568
|||||||||||||||||| ||||| || ||||||||||||||||| ||||| |||| ||
Sbjct 503 TGGTGAAGAAGCCTCAAAAATTAAACGTAAAGATAGGGAATCGTGTTGAAATTGGAGTAA 562
Query 569 ACACATGCATTGATCGGGGCAGCTGGAGAGATACCGTGATCGGGGATGATACTAAGATAG 628
| || ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 563 ATACTTGCATTGATCGAGGCAGCTGGAGAGATACCGTAATCGAAGATGATACTAAGATAG 622
Query 629 ACAACTTAGTTCAGATAGGTCACAATGTGATTATTGGCAAA-TGTTGCTTG-TTCTGTGG 686
|||||||||| |||||||||||||||||||| || || ||| ||||||||| || |||||
Sbjct 623 ACAACTTAGTGCAGATAGGTCACAATGTGATCATAGG-AAAGTGTTGCTTGCTT-TGTGG 680
Query 687 CCAAGTAGGCATAGCTGGATCAG-CAGAGATTGGTGACTTTGTAGCACTAGGAGGACGAG 745
||||||||||| ||||| |||| | | |||||||||| ||| || ||||||||||||
Sbjct 681 TCAAGTAGGCATCGCTGGTTCAGTAACA-ATTGGTGACTATGTGGCTTTAGGAGGACGAG 739
Query 746 -TAGCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCTGCTAATAGTTGT 804
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 740 CT-GCTGTTCGAGACCATGTCTCCATTGTATCCAAGGTTCGACTTGCGGCTAATAGTTGT 798
Query 805 GTTACTAAAAACATTACGGAACCAGGGGATTACGGCGGTTTTCCTGCT 852
|||||||||||||| || || ||||| |||| || || |||||||||
Sbjct 799 GTTACTAAAAACATCACTGAGCCAGGAGATTTTGGAGGCTTTCCTGCT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5