BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05220.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490170 jgi|Araly1|490170|fgenesh2_kg.6__3304__AT4G05220.1 1103 0.0
> Ahg490170 jgi|Araly1|490170|fgenesh2_kg.6__3304__AT4G05220.1
Length=681
Score = 1103 bits (597), Expect = 0.0
Identities = 654/682 (96%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 1 ATGACACCAGACCGAACAACTATCCCGATCCGCACCAGTCCCGTACCCCGAGCCCAACCC 60
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1 ATGACACCAGATCGAACAACTATCCCGATCCACACCAGTCCCGTGCCCCGAGCCCAACCC 60
Query 61 ATGAAGCGTCACCATTCCGCTAGCTACTACGCTCACCGTGTCAGAGAAAGCCTCTCAACC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGAAGCGTCACCATTCGGCTAGCTACTACGCTCACCGTGTCAGAGAAAGCCTCTCAACC 120
Query 121 CGGATATCGAAATTCATCTGCGCAATGTTTCTCTTGGTTTTGTTCTTTGTAGGCGTCATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGATATCGAAATTCATCTGCGCAATGTTTCTCTTGGTTTTGTTCTTTGTAGGCGTCATT 180
Query 181 GCTTTCATACTTTGGCTCAGTTTACGCCCTCATAGACCTCGGTTCCATATCCAAGACTTC 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GCTTTCATACTTTGGCTCAGTTTACGCCCTCATCGACCTCGGTTCCATATCCAAGACTTC 240
Query 241 GTGGTACAAGGTCTAGACCAGCCTACCGGAGTCGAAAACGCAAGAATTGCTTTCAATGTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGGTACAAGGTCTAGACCAGCCTACCGGAGTCGAAAACGCAAGAATTGCTTTCAATGTA 300
Query 301 ACCATACTTAACCCTAACCAACATATGGGTGTTTACTTTGATTCCATGGAAGGTTCCATT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 ACTATACTTAACCCTAACCAACATATGGGTGTTTACTTTGATTCCATGGACGGTTTCATT 360
Query 361 TACTACAAAGATCAACGGGTCGGATTGATCCCATTGCTAAACCCGTTTTTCCAGCAA-CC 419
||||||||||||||||||||||| | |||||| ||||||||||||||||||||| || ||
Sbjct 361 TACTACAAAGATCAACGGGTCGGGTCGATCCCGTTGCTAAACCCGTTTTTCCAG-AAGCC 419
Query 420 GACTAACACAACAATTGTGACCGGGACGCTTACAGGAGCTTCCTTAACGGTAAACAGTAA 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GACTAACACAACAATTGTGACCGGGACGCTTACTGGAGCTTCCTTAACGGTAAACAGTAA 479
Query 480 CCGCTGGACCGAGTTTAGTAATGATCGGGCTCAAGGAACCGTGGGTTTCAGGCTCGATAT 539
||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 480 CCGTTGGACCGAGTTTTCTAATGATCGGGCTCAAGGAACCGTGGGTTTTAGGCTAGATAT 539
Query 540 AGTTTCGACTATTCGGTTTAAACTCCATAGGTGGATCAGTAAGCATCATAGGATGCACGC 599
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 540 AGTTTCAAATATTCGGTTTAAACTCCATAGGTGGATCAGTAAGCGCCATAGGATGCATGC 599
Query 600 TAATTGCAACATCGTGGTTGGAAGAGACGGGTTGATCTTGCCCAAGTTTAACCATAAACG 659
||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 600 TAATTGCGATATCGTGGTTGGACGAGACTGGTTGATCTTGCCCAAGTTTAACCATAAACG 659
Query 660 GTGTCCAGTCTACTTCACTTAG 681
||||||||||||||||||||||
Sbjct 660 GTGTCCAGTCTACTTCACTTAG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5