BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05230.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490171 jgi|Araly1|490171|fgenesh2_kg.6__3305__AT4G05230.1 841 0.0
> Ahg490171 jgi|Araly1|490171|fgenesh2_kg.6__3305__AT4G05230.1
Length=616
Score = 841 bits (455), Expect = 0.0
Identities = 571/625 (91%), Gaps = 15/625 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTGTTCTTCGAGACTCGGAGTGG-TTCCACATTCGAGATTGAATTAGGTTATTG 59
|||||||||||||||||||||||||| || || ||| |||||||||||||| ||||||||
Sbjct 1 ATGGATGTGTTCTTCGAGACTCGGAGCGGCTT-CACGTTCGAGATTGAATTGGGTTATTG 59
Query 60 GGATACAGTGTTGGAGATCAAACAA-AAGATCGAGAAGTATCAACGTATCCCAGTTTCCA 118
||||||||| |||||||||||| || ||||||||||||||||||| ||||| |||||||
Sbjct 60 GGATACAGTTTTGGAGATCAAA-AAGAAGATCGAGAAGTATCAACAAATCCCTGTTTCCA 118
Query 119 AACAAACCCTTTTATTCCAAGGCAATGTTCTTCAAGATCATCTTGATATCGAACAATGTG 178
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 AACAAACCCTTTTCTTTCAAGGCAATGTTCTTCAAGATCATCTTGATATCGAACAGTGTG 178
Query 179 TGATCCTTAACCACTCTCGTATCCAACTTTCCATCTCTTCTCCCGACCAAAGCCGTAACA 238
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 179 TGATCCTCAACCACTCTCGTATCCAACTTTTCATCTCTTCTCCCGACCAAAACCGTAACA 238
Query 239 ACATTCAAGTGTTCAAAACCGAGCAAT-TCCCACAGTCAAATTCAACAGAACAGA-C-C- 294
| | |||||||||||||||||||||| ||| ||||||||| |||| |||||||| | |
Sbjct 239 A--T-CAAGTGTTCAAAACCGAGCAATCTCC-ACAGTCAAACTCAAAAGAACAGATCACT 294
Query 295 AGTAACGGTCATCATGAATCAACAGTGATGATCCCAATGAGcaacaacaacaacaacaac 354
| ||| |||||||| || ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 295 AATAATGGTCATCAAGATTCACCTGTGATGATGCCAATGAGCAACAACAACAACAACAAC 354
Query 355 aacCCGAAGAAGCTGAGAGTAATGGTGTTGCCGAAATCCGGGACTAGGAAGATTCCGGTG 414
|| ||||||||||||||||||||| | || |||| ||||||||||||||||||||||
Sbjct 355 --CCA-AAGAAGCTGAGAGTAATGGTGCTACCAAAATGCGGGACTAGGAAGATTCCGGTG 411
Query 415 GACGTGAACGCAGGGGATAATGTTGGAGAGCTGAGGAAAGAGTTGGCTAAGATTCAACAG 474
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 412 GAGGTGAACGCAGGGGATAACGTTGGAGAGCTGAGGAAAGAGCTGGCTAAGATTCAACAG 471
Query 475 AGGTTTCAGTTAAGTCTGCCTCAAGAAGGCTATTTCTTTATCTATAAACAGAATGTAATG 534
||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 472 AGGTTACAATTAAGTCTGCCTCAAGAAGGGTATTTCTTTATATACAAACAGAATGTAATG 531
Query 535 GATGAAAACAGGTCATTCCGGTGGCACCGTGTTGATCAAGGCGACACAATTGAGATTTTC 594
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 532 GACGAAAACCGGTCATTCCGGTGGCACCGTGTTGATCACGGCGACACGATTGAGATTTTC 591
Query 595 AACGGAAGTGTTTCCGGTGGCTCTT 619
|||||||||||||||||||||||||
Sbjct 592 AACGGAAGTGTTTCCGGTGGCTCTT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5