BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05300.1

Length=1164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1          259    3e-68
  Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1         195    9e-49
  Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1         139    4e-32
  Ahg497486 jgi|Araly1|497486|fgenesh2_kg.616__1__AT2G12505.1          121    1e-26


> Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1
Length=459

 Score =  259 bits (140),  Expect = 3e-68
 Identities = 203/233 (87%), Gaps = 6/233 (3%)
 Strand=Plus/Plus

Query  910   GTTCGA-GGAAGCACAAGGATAAGTGCATCCGAGCACACCCAAGGGTCGCCCATGGATGC  968
             |||||| |||| ||| |||||||||||| || | ||||||||||||||||||||||||||
Sbjct  226   GTTCGATGGAATCACGAGGATAAGTGCAACCAAACACACCCAAGGGTCGCCCATGGATGC  285

Query  969   AATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGCCATGGTGAAACCGATCA-GA-G-  1025
             ||||| |||||||||||||| ||||||| |||||||  |  ||||    | |||  | | 
Sbjct  286   AATCTCACCGGTAAAGGGAGTAAGCACCGAGAATGGGTA-AGTGACGTGGTTCACCATGA  344

Query  1026  ATCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCTACGGTGGGAACC  1085
             |||||||| ||| || ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  345   ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACGGTGAGAACC  403

Query  1086  GATGGACAAAACGGATGTTGGACCCGCGAGCAAACCTAAGGCCGACGGAAGAA  1138
             | |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  404   GGTGGACAAAACGGATGTTGGACCCGCGAGCAAACCAAAGGCCGACGGACGAA  456


 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  670  GGTCAGCTGACACTCGAGCTGGTGGACTGTGGTAGCTC  707
            ||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGTCAGCTGACACTCGAGCTGGTGGACTGTGGTAGCTC  38


> Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1
Length=381

 Score =  195 bits (105),  Expect = 9e-49
 Identities = 247/311 (79%), Gaps = 27/311 (9%)
 Strand=Plus/Plus

Query  785   gacggatcggatcg-gccaga-cggatcggact-gactgatcgtcggacggGTCAGATGG  841
             ||||||| |||| | | ||||  |||| ||| | ||| ||||||||||||| || ||| |
Sbjct  14    GACGGAT-GGAT-GAGTCAGATTGGAT-GGA-TAGACCGATCGTCGGACGGATCGGATCG  69

Query  842   GACAGGCCGATCGTCTGACAGAACGGGACGGACAGA-C--C-GATC--ATCGGAT-G--G  892
             ||||| ||||||||| ||| || |  ||| ||| || |  | || |  ||| ||| |   
Sbjct  70    GACAGACCGATCGTCGGACGGATC-AGACAGACCGATCGTCGGA-CGGATCAGATAGACC  127

Query  893   GAT-G-G-AT-CGAGAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAGCACACC  948
             ||| | | ||  | ||||||||||||| ||||||| |||||||||||| |||| ||||||
Sbjct  128   GATCGCGTATAAGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACC  187

Query  949   CAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGCCAT  1008
             ||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||  | 
Sbjct  188   CAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGTAAGTACCGAGAATGGGTAA  247

Query  1009  GGTGAAACCGATCAG-A-GA-TCGGTAAGACCAAAGGGTGACTCGACGGATAACCAACGG  1065
             | |||    | |||  | || ||||||| ||||| || ||||||||||||||||||||||
Sbjct  248   G-TGACGTGGTTCACCATGAATCGGTAACACCAATGG-TGACTCGACGGATAACCAACGG  305

Query  1066  GAAAGTCTACG  1076
             ||||||| |||
Sbjct  306   GAAAGTCCACG  316


> Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1
Length=348

 Score =  139 bits (75),  Expect = 4e-32
 Identities = 178/223 (80%), Gaps = 25/223 (11%)
 Strand=Plus/Plus

Query  769  cggatcggatcggccagacggatcggatcggccaga-cggatcggactgactgatcgtcg  827
            ||||| |||| ||  |||| |||| | |||| | || |||||||||| ||| ||||||||
Sbjct  29   CGGATTGGAT-GGATAGACCGATC-G-TCGGACGGATCGGATCGGACAGACCGATCGTCG  85

Query  828  gacggGTCAGATGGGACAGGCCGATCGTCTGACAGAACGGGA-CGGACAGACCGATCATC  886
            ||||| ||  |   ||||| ||||||||| |   | || ||| | || |||||||||  |
Sbjct  86   GACGGATC--A---GACAGACCGATCGTC-G---G-AC-GGATCAGATAGACCGATC-GC  133

Query  887  GGATGGGATGGATCGAGAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAGCACA  946
             | |   ||  |  | ||||||||||||| ||||||| |||||||||||| |||| ||||
Sbjct  134  -G-T---AT--A-AGGGAAAAGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACA  185

Query  947  CCCAAGGGTCGCCCATGGATGCAATCTTACCGGTAAAGGGAGA  989
            ||||||||||||||||||||||||||| |||||||||||||||
Sbjct  186  CCCAAGGGTCGCCCATGGATGCAATCTCACCGGTAAAGGGAGA  228


> Ahg497486 jgi|Araly1|497486|fgenesh2_kg.616__1__AT2G12505.1
Length=849

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 85/94 (90%), Gaps = 4/94 (4%)
 Strand=Plus/Minus

Query  1060  CAACGGGAAAGTCTACGGTGGGAACCGA-TGGACAAAACGGATGTTGGACCCGCGAGCAA  1118
             ||||||||||||| |||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct  319   CAACGGGAAAGTCCACGGTGAGAA-CTAGTGGACAAAACGGATGTTGGACCCGCGAGCAA  261

Query  1119  ACCTAAGGCCGACGGAAGAAA-GATTTCATGGGC  1151
             ||| ||||||||||||  ||| ||||||||||||
Sbjct  260   ACCAAAGGCCGACGGAC-AAATGATTTCATGGGC  228


 Score =  102 bits (55),  Expect = 5e-21
 Identities = 65/70 (93%), Gaps = 0/70 (0%)
 Strand=Plus/Minus

Query  903  GAAAAGTGTTCGAGGAAGCACAAGGATAAGTGCATCCGAGCACACCCAAGGGTCGCCCAT  962
            |||| |||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct  388  GAAAGGTGTTCGAAGAAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCAT  329

Query  963  GGATGCAATC  972
            ||||||||||
Sbjct  328  GGATGCAATC  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43422002463


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5