BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G05310.1 Length=1248 Score E Sequences producing significant alignments: (Bits) Value Ahg490172 jgi|Araly1|490172|fgenesh2_kg.6__3306__AT4G05310.1 628 2e-179 Ahg895628 jgi|Araly1|895628|Al_scaffold_0006_3624 143 3e-33 Ahg895600 jgi|Araly1|895600|Al_scaffold_0006_3596 143 3e-33 > Ahg490172 jgi|Araly1|490172|fgenesh2_kg.6__3306__AT4G05310.1 Length=1173 Score = 628 bits (340), Expect = 2e-179 Identities = 581/688 (84%), Gaps = 54/688 (8%) Strand=Plus/Plus Query 1 ATGAAGTTTGTGGTCGAGATTCTGGGTGGTTCATCGTTCGAGATTGAAGTGGAACGCACA 60 |||||||| | |||||||||||| ||||||||| ||||||||||||| |||| |||| | Sbjct 1 ATGAAGTTCCTCGTCGAGATTCTGAGTGGTTCATTGTTCGAGATTGAACTGGATCGCAAA 60 Query 61 GATACATTGTTAGTGGTCAAACAGAAGATCGAGAAGTCTCAACGTGTCCCAGTTTCGAAA 120 ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| Sbjct 61 GATACATTGTTAGTGGTCAAACAGAGGATCGAGAAGTCTCAACGTATCCCTGTTTCGAAA 120 Query 121 CAAACCCTTATCGTCGACGGCATTTTTATTCTTCGAGAAGATCTTAACCTCGACCAATGC 180 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CAAACCCTTATCGTCGACGGTATTTTTATTCTTCGAGAGGATCTTAACCTCGACCAATGC 180 Query 181 CAGATCTTCCACGATTCTCAAATCCAACTCGAAGTCTCTCCTGACGTGAACCCTATTCAC 240 |||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||| Sbjct 181 CAGATCGTCCACGATTCTCAAATCCAGCTCGAAGTCTCTCCTGACGTGAACCATAATCAC 240 Query 241 AACAACGACGATCAAATCCCGCAAACAGAGCAATCTCCTCCAGCACCGTGGATTTCAGTT 300 ||| | |||||||||| ||| ||||||||||| | ||||||||||||||||||||||| Sbjct 241 AACGGCAACGATCAAATGCCGGAAACAGAGCAA--T-CTCCAGCACCGTGGATTTCAGTT 297 Query 301 GAAGAGTACTTTGCGGA-GCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359 ||||||||||||| || | ||| |||||||||||||| |||||||||||||||||||| Sbjct 298 GAAGAGTACTTTG-AGAGGAAAGGTTGGCCTTTGACAGCCGAAGAGATCAGAAAGATTTA 356 Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCATCAAACAGA 419 ||||||||||||| | ||||| | | | | ||| ||| || | Sbjct 357 CAGTTATCGGCCT--G--------AGACA--A-T--G---CTAGA----CAT----CA-A 389 Query 420 GGAATCTCCACCGTCAAACTCAGTCAAAGAGACCGTTAACATTCAAGATTCGTCTGTGAA 479 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 390 GCAATCTCCACCGTCAAACTCAGTCAAAGAGACCATTAACATTCAAGATTCGTCTGTGAA 449 Query 480 GTTTGCGAGTAAGAACAACAACGATCAAGTGCCTCCAACGAAG-CAATTTCCACAGTCAA 538 |||||||| ||||||||||||||||| |||||||||| | | | ||| || | ||||| Sbjct 450 GTTTGCGAATAAGAACAACAACGATCTAGTGCCTCCA-C-A-GTCAAACTC-A--GTCAA 503 Query 539 ACTTAGTCAAAAAGATCA-CTAACG-Gaaaa-aa-aaGAGTCCGGCAGATGCTAGTATAT 594 | || ||| |||| || | || | | || ||||| | ||||| ||||| | Sbjct 504 AAATA-TCACTAAGAGCAACAAAAGAGGCCGGAAGAAGAG---GA-AGATGGTAGTAGGT 558 Query 595 GTGTCGCCATATCCTGGTATGAATGAAGTCCC-AACGAATATTCTGGTG-CAAGTGAAAG 652 |||||||||||| ||||||||||||||||||| || |||||||||| || | |||| | Sbjct 559 GTGTCGCCATATTCTGGTATGAATGAAGTCCCGAA-GAATATTCTGCTGACT-GTGATA- 615 Query 653 T-TACGGATGAGGTGAAAACACTGAGAG 679 | |||||||||||||||||||||||||| Sbjct 616 TCTACGGATGAGGTGAAAACACTGAGAG 643 Score = 507 bits (274), Expect = 1e-142 Identities = 430/499 (86%), Gaps = 36/499 (7%) Strand=Plus/Plus Query 675 GAGAGGTCTTATGA-AACTGGCTCAAGAAGGGTACATCTTTACGCACAATAATCAAGTAT 733 ||||||| ||| | ||||| ||||||||||||| ||||||| |||||||||||||||| Sbjct 666 GAGAGGTGATAT-AGAACTGCCTCAAGAAGGGTATTTCTTTACACACAATAATCAAGTAT 724 Query 734 TGAACGAAGATCAGTCATACGAGTGTAACAGTGTTAAACCCTTGGATACAATTGTGATTG 793 ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| | Sbjct 725 TGAACGAAGATCAGTCATACGAGTGGAACGGTGTTAAACCCGTGGATACAATTGTGATGG 784 Query 794 TTCCCAGACGTGTTATCCAAGAGACCAGTAAGATTCAAGATTCGTCTGTGACGGTTCAAG 853 |||||| || |||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 785 TTCCCACACATGTTATCCAAGAGACCTGTAAGATTCAAGATTCTTCTGTGACGGTTCAAG 844 Query 854 TGCCTCAAATGGAGCAATCTCCAGCGTCAAACTCAGTCAAAGAGATCACTGACCCGAAGA 913 ||||||||| ||||||| ||||| | | ||| | | ||| | | | Sbjct 845 TGCCTCAAACGGAGCAACCTCCA--G-------C-GTC----A-A--ACT----C--A-A 880 Query 914 AGAAGATTAAAGTATATGTGGTGGCAGCTTCAAGTGAGTGTAAAGG-TCTGAAGAGATTT 972 |||| | |||||||||||| || || |||||||||||||||||| | ||||||||||| Sbjct 881 AGAA-A--AAAGTATATGTGATGCCATTTTCAAGTGAGTGTAAAGGAT-TGAAGAGATTT 936 Query 973 ATTGAGGTGGATGTGAACTCGACGGATCAAGTGAAAATACTGAGAACCGAGTTGGTTGAA 1032 ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 937 ATTGAGGTGGAAGTGAGCTCGACGGATCAAGTGAAAATACTGAGAAACGAGTTGGTTGAA 996 Query 1033 AGTGGTCGGAGGGGTCATATAAGAA-TGCCTCACGAAGGATATTTCTTTGTGGACAGAAA 1091 ||| |||||||||| |||||| || ||||||| |||||||||||||||| |||||||| Sbjct 997 AGTATTCGGAGGGGTTATATAA-AACTGCCTCATGAAGGATATTTCTTTGCGGACAGAAT 1055 Query 1092 GAAAGAGAGAGTATTGAACGAAGATCAGTCATTCGAGTGGAACCGTGTTCTT---CCAGC 1148 ||| |||||| ||||||| |||||||||||||||||||||||| |||||||| ||||| Sbjct 1056 GAAGGAGAGAATATTGAATGAAGATCAGTCATTCGAGTGGAACGGTGTTCTTGGTCCAGC 1115 Query 1149 CGAAACAGTTTATATGGTT 1167 ||||||||||||||||||| Sbjct 1116 CGAAACAGTTTATATGGTT 1134 > Ahg895628 jgi|Araly1|895628|Al_scaffold_0006_3624 Length=381 Score = 143 bits (77), Expect = 3e-33 Identities = 100/111 (90%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359 ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 148 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 206 Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410 ||||||| |||||||||||| |||| ||||||||| |||||||| |||| Sbjct 207 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 257 > Ahg895600 jgi|Araly1|895600|Al_scaffold_0006_3596 Length=429 Score = 143 bits (77), Expect = 3e-33 Identities = 100/111 (90%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359 ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 196 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 254 Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410 ||||||| |||||||||||| |||| ||||||||| |||||||| |||| Sbjct 255 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46624327491 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5