BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05310.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490172 jgi|Araly1|490172|fgenesh2_kg.6__3306__AT4G05310.1 628 2e-179
Ahg895628 jgi|Araly1|895628|Al_scaffold_0006_3624 143 3e-33
Ahg895600 jgi|Araly1|895600|Al_scaffold_0006_3596 143 3e-33
> Ahg490172 jgi|Araly1|490172|fgenesh2_kg.6__3306__AT4G05310.1
Length=1173
Score = 628 bits (340), Expect = 2e-179
Identities = 581/688 (84%), Gaps = 54/688 (8%)
Strand=Plus/Plus
Query 1 ATGAAGTTTGTGGTCGAGATTCTGGGTGGTTCATCGTTCGAGATTGAAGTGGAACGCACA 60
|||||||| | |||||||||||| ||||||||| ||||||||||||| |||| |||| |
Sbjct 1 ATGAAGTTCCTCGTCGAGATTCTGAGTGGTTCATTGTTCGAGATTGAACTGGATCGCAAA 60
Query 61 GATACATTGTTAGTGGTCAAACAGAAGATCGAGAAGTCTCAACGTGTCCCAGTTTCGAAA 120
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 61 GATACATTGTTAGTGGTCAAACAGAGGATCGAGAAGTCTCAACGTATCCCTGTTTCGAAA 120
Query 121 CAAACCCTTATCGTCGACGGCATTTTTATTCTTCGAGAAGATCTTAACCTCGACCAATGC 180
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CAAACCCTTATCGTCGACGGTATTTTTATTCTTCGAGAGGATCTTAACCTCGACCAATGC 180
Query 181 CAGATCTTCCACGATTCTCAAATCCAACTCGAAGTCTCTCCTGACGTGAACCCTATTCAC 240
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||
Sbjct 181 CAGATCGTCCACGATTCTCAAATCCAGCTCGAAGTCTCTCCTGACGTGAACCATAATCAC 240
Query 241 AACAACGACGATCAAATCCCGCAAACAGAGCAATCTCCTCCAGCACCGTGGATTTCAGTT 300
||| | |||||||||| ||| ||||||||||| | |||||||||||||||||||||||
Sbjct 241 AACGGCAACGATCAAATGCCGGAAACAGAGCAA--T-CTCCAGCACCGTGGATTTCAGTT 297
Query 301 GAAGAGTACTTTGCGGA-GCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359
||||||||||||| || | ||| |||||||||||||| ||||||||||||||||||||
Sbjct 298 GAAGAGTACTTTG-AGAGGAAAGGTTGGCCTTTGACAGCCGAAGAGATCAGAAAGATTTA 356
Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCATCAAACAGA 419
||||||||||||| | ||||| | | | | ||| ||| || |
Sbjct 357 CAGTTATCGGCCT--G--------AGACA--A-T--G---CTAGA----CAT----CA-A 389
Query 420 GGAATCTCCACCGTCAAACTCAGTCAAAGAGACCGTTAACATTCAAGATTCGTCTGTGAA 479
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 390 GCAATCTCCACCGTCAAACTCAGTCAAAGAGACCATTAACATTCAAGATTCGTCTGTGAA 449
Query 480 GTTTGCGAGTAAGAACAACAACGATCAAGTGCCTCCAACGAAG-CAATTTCCACAGTCAA 538
|||||||| ||||||||||||||||| |||||||||| | | | ||| || | |||||
Sbjct 450 GTTTGCGAATAAGAACAACAACGATCTAGTGCCTCCA-C-A-GTCAAACTC-A--GTCAA 503
Query 539 ACTTAGTCAAAAAGATCA-CTAACG-Gaaaa-aa-aaGAGTCCGGCAGATGCTAGTATAT 594
| || ||| |||| || | || | | || ||||| | ||||| ||||| |
Sbjct 504 AAATA-TCACTAAGAGCAACAAAAGAGGCCGGAAGAAGAG---GA-AGATGGTAGTAGGT 558
Query 595 GTGTCGCCATATCCTGGTATGAATGAAGTCCC-AACGAATATTCTGGTG-CAAGTGAAAG 652
|||||||||||| ||||||||||||||||||| || |||||||||| || | |||| |
Sbjct 559 GTGTCGCCATATTCTGGTATGAATGAAGTCCCGAA-GAATATTCTGCTGACT-GTGATA- 615
Query 653 T-TACGGATGAGGTGAAAACACTGAGAG 679
| ||||||||||||||||||||||||||
Sbjct 616 TCTACGGATGAGGTGAAAACACTGAGAG 643
Score = 507 bits (274), Expect = 1e-142
Identities = 430/499 (86%), Gaps = 36/499 (7%)
Strand=Plus/Plus
Query 675 GAGAGGTCTTATGA-AACTGGCTCAAGAAGGGTACATCTTTACGCACAATAATCAAGTAT 733
||||||| ||| | ||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 666 GAGAGGTGATAT-AGAACTGCCTCAAGAAGGGTATTTCTTTACACACAATAATCAAGTAT 724
Query 734 TGAACGAAGATCAGTCATACGAGTGTAACAGTGTTAAACCCTTGGATACAATTGTGATTG 793
||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
Sbjct 725 TGAACGAAGATCAGTCATACGAGTGGAACGGTGTTAAACCCGTGGATACAATTGTGATGG 784
Query 794 TTCCCAGACGTGTTATCCAAGAGACCAGTAAGATTCAAGATTCGTCTGTGACGGTTCAAG 853
|||||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 785 TTCCCACACATGTTATCCAAGAGACCTGTAAGATTCAAGATTCTTCTGTGACGGTTCAAG 844
Query 854 TGCCTCAAATGGAGCAATCTCCAGCGTCAAACTCAGTCAAAGAGATCACTGACCCGAAGA 913
||||||||| ||||||| ||||| | | ||| | | ||| | | |
Sbjct 845 TGCCTCAAACGGAGCAACCTCCA--G-------C-GTC----A-A--ACT----C--A-A 880
Query 914 AGAAGATTAAAGTATATGTGGTGGCAGCTTCAAGTGAGTGTAAAGG-TCTGAAGAGATTT 972
|||| | |||||||||||| || || |||||||||||||||||| | |||||||||||
Sbjct 881 AGAA-A--AAAGTATATGTGATGCCATTTTCAAGTGAGTGTAAAGGAT-TGAAGAGATTT 936
Query 973 ATTGAGGTGGATGTGAACTCGACGGATCAAGTGAAAATACTGAGAACCGAGTTGGTTGAA 1032
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 937 ATTGAGGTGGAAGTGAGCTCGACGGATCAAGTGAAAATACTGAGAAACGAGTTGGTTGAA 996
Query 1033 AGTGGTCGGAGGGGTCATATAAGAA-TGCCTCACGAAGGATATTTCTTTGTGGACAGAAA 1091
||| |||||||||| |||||| || ||||||| |||||||||||||||| ||||||||
Sbjct 997 AGTATTCGGAGGGGTTATATAA-AACTGCCTCATGAAGGATATTTCTTTGCGGACAGAAT 1055
Query 1092 GAAAGAGAGAGTATTGAACGAAGATCAGTCATTCGAGTGGAACCGTGTTCTT---CCAGC 1148
||| |||||| ||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1056 GAAGGAGAGAATATTGAATGAAGATCAGTCATTCGAGTGGAACGGTGTTCTTGGTCCAGC 1115
Query 1149 CGAAACAGTTTATATGGTT 1167
|||||||||||||||||||
Sbjct 1116 CGAAACAGTTTATATGGTT 1134
> Ahg895628 jgi|Araly1|895628|Al_scaffold_0006_3624
Length=381
Score = 143 bits (77), Expect = 3e-33
Identities = 100/111 (90%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 148 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 206
Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410
||||||| |||||||||||| |||| ||||||||| |||||||| ||||
Sbjct 207 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 257
> Ahg895600 jgi|Araly1|895600|Al_scaffold_0006_3596
Length=429
Score = 143 bits (77), Expect = 3e-33
Identities = 100/111 (90%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 196 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 254
Query 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410
||||||| |||||||||||| |||| ||||||||| |||||||| ||||
Sbjct 255 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5