BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05330.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1 1977 0.0
Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1 1024 0.0
> Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1
Length=1275
Score = 1977 bits (1070), Expect = 0.0
Identities = 1233/1306 (94%), Gaps = 34/1306 (3%)
Strand=Plus/Plus
Query 1 GCCAATTTTCTTGTAAATTCACCTCTTTCCTTCGTCTATCTATCCTCCCTTCCGCAACAT 60
|||| |||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 1 GCCATTTTTCTTGAAAATTCATCTCTTTCCTTTGTCTATCTATCCTCCCTTCCCCAACAT 60
Query 61 TGATTTTGTTTGATGATCGTTGGGTTTTGAAAGAAGAGCAATGAGCAATTATGCAGCCGG 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGATTTTGTTTGATGATTGTTGGGTTTTGAAAGAAGAGCAATGAGCAATTATGCAGCCGG 120
Query 121 ACTCGGTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCGGTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAA 180
Query 181 CCGAGTCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CCGAGTCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGGGT 240
Query 241 ATTCATTTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 ATTCATTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGGCACTCATATCTCAAAGGT 300
Query 301 TTTGTCTGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGG 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGTCTGTGACACTTGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGG 360
Query 361 AGGAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCC 420
||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 361 AGGAAATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACATGCTCTAAGCC 420
Query 421 TGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCA 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCA 480
Query 481 AGAGTTTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTCAACAAAGAGTTCAGC 540
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 AGAGTTTCTGAAGCCAAGCTTGCGGATTACATCCGGGAAATGCTCAACAAAGAGTTCAGC 540
Query 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
Query 601 GCAGACGATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAA 660
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAGAAGATATTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAA 660
Query 661 GAAGGGAACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAAGGTACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
Query 721 TCTAGGGAAGCAAAAACTTCAGACAACTGTTATGAATAGTAATTTGAACCCGGTATGGAA 780
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 TCTAGGGAAGCAAAAACTTCAGACAACTGTTGTGAATAGTAATTTGAACCCGGTATGGAA 780
Query 781 TCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTGTATGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTGTATGA 840
Query 841 TTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAACCTTT 900
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 841 TTATGATACATTTTCTGCTGATGACATAATGGGGGAAGCAGAGATTGATATCCAACCTTT 900
Query 901 GATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATTGGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATTGGGAA 960
Query 961 ATGGCTAAAATCGCATGATAACCCATTAATAGATGACAGTATCATTAACATTGTTGATGG 1020
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 961 ATGGCTAAAATCGCATGATAATCCACTAATAGATGACAGTATCATTAACATTGTTGATGG 1020
Query 1021 GAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATTAGAGCT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAATTAGAGCT 1080
Query 1081 AGAAATGGAATGGCTGCCACTTGACCAATAAGTGTCATATAGG-TCTCATAACCTTTATA 1139
||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1081 AGAAATGGAATGGCTACCACTTGACCAATAAGTGTCAAATAGGGTCTCATAACCTCTATA 1140
Query 1140 AATGTACTGATTGATTTAATTCTTTGttttttttttttCTCTCCATTTGTTGGAAATTTT 1199
||| | || ||| |||| ||||||||| | | |||||||
Sbjct 1141 AAT-T-CT--TTG--------CTTT-TTTTTTTTT-------------G--G-AAATTTT 1171
Query 1200 CAAAAATCTCTTT-GCAtttttttCCTCATTTCAGAGGTAAATGTATTTTGATGTTTGTA 1258
|| || ||| ||| |||||||| ||||||| |||||| |||||||| ||||||||||||
Sbjct 1172 CACAACTCTTTTTTGCATTTTTATCCTCATCCCAGAGGAAAATGTATGTTGATGTTTGTA 1231
Query 1259 TAAACCAATGGATTACTATATGATGTTTT-GATTGATGGAAAAAGG 1303
||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1232 TAACCCAATGGATTACTAT--GATGTTTTTGATTGATGGAAAAAGG 1275
> Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1
Length=1216
Score = 1024 bits (554), Expect = 0.0
Identities = 854/998 (86%), Gaps = 23/998 (2%)
Strand=Plus/Plus
Query 127 TAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAGT 186
|||| |||||||||||||||||||||| || |||||||||| |||| |||||||||||||
Sbjct 112 TAAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAGT 171
Query 187 CTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGAGTATTCAT 246
||||||||||||||||||| | |||||||| ||||| ||||| ||||||||||| || ||
Sbjct 172 CTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCGGAGTGTTTAT 231
Query 247 TTGCTTAAAATGTTGCGGTGTGCACAGGAGCCTCGGCACTCATATTTCAAAGGTTTTGTC 306
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || ||
Sbjct 232 ATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAAAGGTCTTATC 291
Query 307 TGTGACACTAGATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGAAA 366
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 292 TGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAATTGGAGGAAA 351
Query 367 TGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGT-GCTCTAAGCCTGGAC 425
||| ||||| ||||||||||| || || ||| |||| || | | |||||||||||||||
Sbjct 352 TGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGA-AGGAAGCTCTAAGCCTGGAC 410
Query 426 CTGATGTTAATCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGAGT 485
|||||| || |||||||||||||||||| ||||||||| | |||||||| | |||||||
Sbjct 411 CTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGCACCAAGAGT 470
Query 486 TTCTGAAACCAAGCTTGCGGATTACATCCGGGAAAGGCTC-A--ACAAAGAGTTCAGCTT 542
||||||||||||||||||| || ||||| | || ||||| | ||||||||| || | |
Sbjct 471 TTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGAGTACACCAT 530
Query 543 TTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATCGC 602
|||| |||||||| | |||| |||||| || ||||| |||||||| |||||||||||||
Sbjct 531 ATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATTCATCATCGC 590
Query 603 AGAC-GATGTTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTATTAAG 661
| || | | | ||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 591 A-ACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTACTATCAAA 649
Query 662 AAGGG-AACTAACTTAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGTGTTGAA 720
||||| ||| || ||||| || |||| ||||||||||||||||| |||||||||||||
Sbjct 650 AAGGGTAAC-AATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTGTGTTGAC 708
Query 721 TCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTA-TGAATAGTAATTTGAACCCGGTAT 776
|||||| || || || || || | | ||||| | |||| || || ||||||||||| |
Sbjct 709 TCTAGGACAA-CAGAAGGCT-CA-ATCTACTGT-AGTGAAGAGCAACTTGAACCCGGTCT 764
Query 777 GGAATCAAG-AACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCAAGTG 835
|||| | || |||||||||| ||||||||| | | ||||||| | |||||||||||||||
Sbjct 765 GGAA-CGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAGTG 823
Query 836 TATGATTATGATACATTTTCTGCTGATGACATAATGGGAGAAGCAGATATTGATATACAA 895
| ||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 824 TTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCCAA 883
Query 896 CCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCAGATT 955
||| |||| |||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 884 CCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGATT 943
Query 956 GGGAAATGGCTAAAATCGCATGATAAC-C-CATTAATAGATGACAGTATCATTAACATTG 1013
|| |||||||| |||||||| || || | | ||| |||| || || ||||| |||||||
Sbjct 944 GGAAAATGGCTGAAATCGCACGACAATGCTC-TTA-TAGAAGATAGCATCATCAACATTG 1001
Query 1014 TTGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGAAT 1073
||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct 1002 CAGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1061
Query 1074 TAGAGCTAGAAATGGAATGGCTGCCACTTGACCAATAA 1111
|||| ||||||||||| |||||||| ||||||||||||
Sbjct 1062 TAGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5