BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05370.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490181 jgi|Araly1|490181|fgenesh2_kg.6__3315__AT4G05370.1         660    0.0  


> Ahg490181 jgi|Araly1|490181|fgenesh2_kg.6__3315__AT4G05370.1
Length=435

 Score =  660 bits (357),  Expect = 0.0
 Identities = 410/436 (94%), Gaps = 2/436 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGTCAAATCTCTTCACAAAAATCCCTTCACTCTCTGCAATTTTCTCGGTTTACACA  60
            |||||||| | | ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGCGTCTAGTTTCTTCACAAAAATTCCTTCACTCTCTGCAATTTTCTCTGTTTACACA  60

Query  61   TCTCTATCTGCCTTCACGATCCTCTTCAAAACCATTCTCTATGAGTTCATTCCCG-TCAA  119
            ||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||  |||
Sbjct  61   TCTCTCTCTGCCTTCACGATCCTCTTAAAAACCATTCTCCATGAGATCATTCCCGACCAA  120

Query  120  TATCCGTGACTTTATCATCTCCAAATTCACAGACTACTTTTCTTTTTATCTCAACTCCAA  179
             ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  121  -ATCCGTGACTTTATCATCTCCAAATTCACAGACTACTTTTCTTCTTATTTCAACTCCAA  179

Query  180  TTTCACGTTCATCATCGAGGAACAGAGCGATTACGTTATGAATCAGACTTTCCGTGCAGC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TTTCACGTTCATCATCGAGGAACAGAGCGATTACGTTATGAATCAGACTTTCCGTGCAGC  239

Query  240  CCAAGTTTACTTGCCGACTCTTCTCTCCAGAATCACCACCAGAAGTCTCCTCGTCAGTTC  299
             |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct  240  TCAAGTTTACTTGCCGACTCTTCTCCCCAGAATCTCCACCAGAAGTCTCCTGGTCAGTTC  299

Query  300  GAGCGACCTCAAGAATCCGATGGCTAAACCGAAATTCGGAATCCCAGTCAAAGCCAAAAT  359
            || |||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||
Sbjct  300  GAACGACCTCAAGAATCCGTTTGCTAAACCCAAATTTGGAATCCCAGTCAAAGCCAAAAT  359

Query  360  CATCGATGAATTCGAAGGGATTCGTCTTGAATGGACACTTCTCTCTGCAAAAGATAATGA  419
             |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct  360  AATCGATGAATTCGAAGGGATTCATCTTGAATGGACTCTTCTCTCTGCAAAAGATAATGA  419

Query  420  TAATCCTTACCAGAGT  435
            ||||||||||||||||
Sbjct  420  TAATCCTTACCAGAGT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5