BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05390.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327454 jgi|Araly1|327454|fgenesh1_pm.C_scaffold_6002674 918 0.0
> Ahg327454 jgi|Araly1|327454|fgenesh1_pm.C_scaffold_6002674
Length=1068
Score = 918 bits (497), Expect = 0.0
Identities = 554/581 (95%), Gaps = 5/581 (1%)
Strand=Plus/Plus
Query 729 GAAAAGAAGATCCTTCCAAAGCTGGTGTATGCAGTAACTTCTTGTGCAATGCCAAACCCG 788
||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 493 GAAAAGAAGATCCTT-C----CTGGTGTATGCAGCAACTTCTTGTGCAATGCCAAACCCG 547
Query 789 GCGATAAAGTTAAAATCACCGGTCCATCTGGAAAGGTAATGCTTTTACCTGAAGATGACC 848
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GCGATAAAGTTAAAATCACTGGTCCATCTGGAAAGGTAATGCTTTTACCTGAAGATGACC 607
Query 849 CGAAAGCTACTCACATAATGATTGCTACTGGAACCGGAGTTGCTCCGTACAGAGGATACC 908
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 608 CAAAAGCTACTCACATAATGATTGCTACTGGAACCGGAGTTGCTCCATACAGAGGATACC 667
Query 909 TACGGCGTATGTTTATGGAGAATGTTCCCAATTTCAAGTTTGACGGACTTGCTTGGCTCT 968
|||||||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||
Sbjct 668 TACGGCGTATGTTTATGGAGAACGTTCCAAATTTCAAGTTTGATGGACTCGCATGGCTCT 727
Query 969 TCCTTGGTGTGGCTAACTCAGACAGTCTTCTCTATGATGAAGAATTTGCCGGGTACCGCA 1028
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 728 TCCTCGGTGTGGCTAACTCAGACAGTCTTCTCTATGATGAAGAATTTGCCGGTTACCTCA 787
Query 1029 AGGACTATCCAGAAAATTTCAGGTACGACAAAGCGCTGAGCAGAGAAGAGAAAAACAAGA 1088
||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 788 AGGACTATCCAGAGAATTTCAAGTACGACAAAGCGCTGAGCAGAGAAGAGAAGAACAAGA 847
Query 1089 AAGGAGGGAAAATGTATGTGCAGGACAAGATTGAAGAATACAGCGATGAAATCTTCAAAC 1148
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 848 AAGGAGGGAAAATGTATGTGCAGGACAAGATTGAAGAATACAGTGACGAGATCTTCAAAC 907
Query 1149 TTCTGGACAATGGAGCTCATATTTACTTTTGCGGACTTAAAGGAATGATGCCCGGGATTC 1208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 908 TTCTGGACAATGGAGCTCATATTTACTTTTGCGGGCTTAAAGGAATGATGCCCGGGATTC 967
Query 1209 AAGATACGCTTAAGAGAGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGCAGAAACTTACTC 1268
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AAGACACTCTTAAGAGGGTCGCTGAAGAGCGAGGCGAAAGCTGGGAGCAGAAACTTACTC 1027
Query 1269 AGCTCAGGAAGAACAAGCAGTGGCATGTTGAAGTGTATTGA 1309
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGCTCAGGAAGAACAAGCAGTGGCATGTTGAAGTGTATTGA 1068
Score = 719 bits (389), Expect = 0.0
Identities = 461/496 (93%), Gaps = 3/496 (1%)
Strand=Plus/Plus
Query 200 ATGTCCGTTGCACTTCCAACTAGAATTGATGGGTCGAGCCGATCTATGATTAAGGTTCAA 259
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTCTATTGCACTTCCAACTGGAATTGATGGGTCGAGCCGATCTATGATTAAGGTGCAG 60
Query 260 AGTATAAGCTTCACTGATAAGTCATGGGGTCCTCCTCTGCTGAGACTAGATTCGAAATCT 319
|||||||| |||||||| ||||||||| | ||||||||||||||||||||| ||||||
Sbjct 61 AGTATAAGTTTCACTGAGAAGTCATGGAG---TCCTCTGCTGAGACTAGATTCAAAATCT 117
Query 320 AGAAGCTTAGGTGTGaaaaaaaGGTCCACAATATGCATGTCACTTCAGCAATCAAGCAAA 379
||||||||| ||||||| ||| |||| |||||||| ||||||||||||||| |||||| |
Sbjct 118 AGAAGCTTAAGTGTGAATAAACGGTCGACAATATGTATGTCACTTCAGCAAGCAAGCAGA 177
Query 380 TCCAAAGTCTTGGTTACTCCTCTAGAACTTGAAGATCCCAAAGAGACTCCCTTAAACTTG 439
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TCCAAAGTAGCGGTTACTCCTCTAGAACTTGAAGATCCCAAAGAGACTCCGTTAAACTTG 237
Query 440 TTTAGGCCTAAGGAGCCTTATACTGCAACTATTGTTTCGGTTGAGAGAATTGTTGGTCCA 499
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 238 TACAGGCCTAAGGAGCCTTATACGGCAACGATTGTTTCGGTTGAGAGAATTGTTGGTCCA 297
Query 500 CAAGCACCTGGAGAGACTTGCCACATTGTTATTGATCATGATGGTAATGTTCCTTACTGG 559
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 298 CAAGCACCTGGAGAGACTTGCCACATTGTAATTGATCATGATGGTAATGTTCCATACTGG 357
Query 560 GAAGGACAAAGCTATGGAGTCATTCCTCCTGGTGAGAATCCCAAGAAACCTGGTGCACCT 619
|||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct 358 GAAGGACAAAGCTATGGAGTGATTCCTCCTGGCGAGAATCCTAAGAAACCTGGTGCTCCT 417
Query 620 CATAACGTTCGCCTTTATTCGATTGCATCAACACGGTATGGAGATTCTTTTGATGGCAAA 679
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 418 CATAACGTTCGCCTTTATTCGATTGCATCAACACGATATGGAGATTCTTTCGATGGCAAA 477
Query 680 ACAGCTAGTCTATGTG 695
||||||||||||||||
Sbjct 478 ACAGCTAGTCTATGTG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5