BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05400.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490185 jgi|Araly1|490185|fgenesh2_kg.6__3319__AT4G05400.1 1402 0.0
> Ahg490185 jgi|Araly1|490185|fgenesh2_kg.6__3319__AT4G05400.1
Length=1022
Score = 1402 bits (759), Expect = 0.0
Identities = 935/1016 (92%), Gaps = 27/1016 (3%)
Strand=Plus/Plus
Query 8 AATCTCTGTACTCAAGCAACATTTTCAGACG---AA--AGCAATCAGAAACTCAGGTGAA 62
|||||| |||||||| || |||||||||||| || || ||||||| |||||||||||
Sbjct 1 AATCTCCGTACTCAAACACCATTTTCAGACGAAAAATCAGAAATCAGATACTCAGGTGAA 60
Query 63 TCAGAAGCATGATTCGAGTTACGAAACCAAAAGCGATCATCGAATCACTGAGTTACCATC 122
|||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
Sbjct 61 TCAGAAGCATGATTCGAGTTACGAGACCAAAACCGATTATCGAATCACTGAGTTACCACC 120
Query 123 TTATCCAAAGATGCTCCGCAAGTGGAACTCCTAAAGGAAAAGCAAAGCTGAAGACAGGTC 182
|| |||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 121 TTCTCCAGAGATGCTCCGCAAGCGGAACTCCTAAAGGAAAGGCAAAGCTAAAGACAGGTC 180
Query 183 AGCCATTGAAGCGTAACAAACTCTCCATCAAGAAA---GGTGGTGGCGGCGGCGGAGCAC 239
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |
Sbjct 181 AGCCATTGAAGCGTAACAAAGTCTCCACCAAGAAAGGTGGTGGTGGCGGCGGCGGAGGAG 240
Query 240 CTGTT-GA-A-GGAGAGGAAGCAGTTAAAGGAAAAGGTAGAATTTCCGATGAGAAGCAGA 296
| ||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 CAGTTGGAGATGGAGAGGAAGCAGTTAAAGGAAAAGGAAGAATTTCCGATGAGAAGCAGA 300
Query 297 AACTCTACGAGCAATGCTTAAACGCTCCTTGTCCTGTTCGCTACTTGACCCCCCAA-GAG 355
| || |||||||||||||||||||||||||||||||| || ||||||| | ||||| |||
Sbjct 301 AGCTTTACGAGCAATGCTTAAACGCTCCTTGTCCTGTCCGTTACTTGA-CACCCAATGAG 359
Query 356 ATCGAGCGTGAGGCGCAACGTGAGAAGCTAGGTTTGATTAGTAAAGAGAAGCAACGAGAT 415
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 ATCGAGCGAGAAGCGCAACGTGAGAAGCTAGGGTTGATTAGTAAAGAGAAGCAACGAGAT 419
Query 416 ATGGAGATCCAGAAGAAAGGAGGAGCTGCTTCAATGGGAGTCACCGATGAGCCGATGCGA 475
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 ATGGAGATCCAGAAGAAAGGAGGAGCTGCTTCAATGGGAATCACCGATGAGCCGATGCGA 479
Query 476 ATTGGGACGCCAGGTTTGGATTACATTTCGTTAGGGATTTTTGAAGCTGAGGAATTGCCT 535
||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 ATTGGTACGCCGGGTTTGGATTACATTTCGTTGGGGATTTTTGAAGCTGATGAATTGCCG 539
Query 536 AAGTATAAGCTTACGGAAGAAGATGGAGAGAGACTTGCGAAGGAGTATAGTAAAGTGTTG 595
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTACAAGCTGACGGAAGAAGATGGAGAGAGACTTGCGAAGGAGTATAGTAAAGTGTTG 599
Query 596 ATGAGAGAGCATAGAGAGCGTCGTGCAGCTGAAACTGCGCTTTTGAATTTGAAGAAATCT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 ATGAGAGAGCATAGAGAGCGTCGTGCAGCTGAAACTGCGCTTTTGAATTTGAAGAAAGCT 659
Query 656 GCTATTGAGGCATTGCCGGAGAATCTGAAGAAGGCGGCGTTAGAGCCTGATTTGACACCG 715
|| |||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 660 GCGATTGAGGCGTTGCCGGAGAATCTGAAGAAAGCGGCATTAGAACCTGATTTGACTCCG 719
Query 716 TTTCCGGCGAATCGAGGTATGGCTACTCTTACACCGCCTATTGAAGGGTATCTTGAGAAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTCCGGCGAATCGAGGTATGGCTACTCTTACACCGCCTATTGAAGGGTATCTTGAGAAG 779
Query 776 GTTATGGATGCAGCTAAGAAGAGTTCAAGTAAAGAGAAGTTGAGATGATTTCGTTTAAAA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTATGGATGCAGCTAAGAAGAGTTCAAGTAAAGAGAAGTTGAGATGATTTCGTTTAAAG 839
Query 836 GTTGAAGCTATTAGTCAGAATGGAGCAGCAACGAGACCA-AGAGACATCAAGAAATTGTC 894
||||||||| |||||||||||| |||||||||||||| | ||||| ||||||||||||||
Sbjct 840 GTTGAAGCT-TTAGTCAGAATGAAGCAGCAACGAGAC-AGAGAGAAATCAAGAAATTGTC 897
Query 895 TCTAGGGATTCTAAGCTTGACTTAAGAGAATTCATTCAAGTAGTAGGCTCTTG--TCTTT 952
||||||| ||| |||||||||||||||||||||||||| | ||||||| ||| |||||
Sbjct 898 TCTAGGGTTTCCAAGCTTGACTTAAGAGAATTCATTCA--T-GTAGGCTATTGCCTCTTT 954
Query 953 TTTGTTTGGAAAAGCAATCTTCTTTTCGCCGGATAAATTACGATCAAGTCTGTGTT 1008
||| |||||||||||||| ||||||| ||| || | |||||||||||||||
Sbjct 955 TTT-TTTGGAAAAGCAATTTTCTTTTTT--GGACAAGT---GATCAAGTCTGTGTT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5