BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05410.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1 2791 0.0
> Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1
Length=1914
Score = 2791 bits (1511), Expect = 0.0
Identities = 1792/1926 (93%), Gaps = 25/1926 (1%)
Strand=Plus/Plus
Query 6 CGTTTTCCAGCTTCTTCCGTCGCCACTAAACCCTGAGGCTAAACCTAGACGAGTCAAAGT 65
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGTTTTTCAGCTTCTTCCGTCGCCACTAAACCCTGAGGCTAAACCTAGACGAGTCAAAGT 60
Query 66 GTAA-AATCGTTAAACCCTaag-agggagtgagagagagaagaatgaagtacaacaacga 123
| || || |||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 61 GCAATAAACGTTAAACCCTAAGAAGAGAGAGAGAGAGAGAAGAATGAAGTACAACAACGA 120
Query 124 gaagaagaaaggaggaagctttaagagaggaggTAAAAAGGGTTCGAATGAAAGGGATCC 183
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGAAGAAAGGTGGAGGCTCTAAGAGAGGAGGTAAAAAGGGTTCGAATGAAAGGGATCC 180
Query 184 ATTTTTTGAGGAAGAGCCGAAGAAACGGAGAAAAGTCAGTTACGATGACGACGATATCGA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTTTTGAGGAAGAGCCGAAGAAACGGAGAAAAGTCAGTTACGATGACGACGATATCGA 240
Query 244 GTCTGTGGACTCTGATGCGGAAGAGAACGGATTTACTGGCGGAGATGAAGATGGGAGAAG 303
|||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 241 GTCTATAGACTCTGATGCGGAAGAGAATGGATTTACTGGCGGAGACGAAGATGGGAGAAG 300
Query 304 AGTTGATGGGGAAGTGGAGGATGAAGATGAGTTTGCTGATGAGACGGCGGGAGAGAAGCG 363
|||||||| |||||||| ||| || |||||||||||||||||||||| ||||||||||
Sbjct 301 AGTTGATGTGGAAGTGGTGGAGGAGGATGAGTTTGCTGATGAGACGGTGGGAGAGAAGAA 360
Query 364 GAAGAGATTGGCGGAGGAGATGCTGAATAGAAGGAGGGAAGCGATGAGGAGAGAGCGTGA 423
|||||||||| ||||||| |||||||||||| ||||||||| | | |||||||||||||
Sbjct 361 GAAGAGATTGACGGAGGATATGCTGAATAGACTGAGGGAAGCTAAGCGGAGAGAGCGTGA 420
Query 424 GGAAGCGGATAatgatgatgatgatgatgaagatgacgatgaGACTATTAAGAAGAGTTT 483
| |||||| ||||||||||||||||||||| || ||||||| ||||||||||| |||
Sbjct 421 GCAAGCGG---GTGATGATGATGATGATGAAGACGATGATGAGAGTATTAAGAAGATTTT 477
Query 484 GATGCAGAAGCAGCAGGAGGATAGTGGTAGGATTCGAAGACTTATTGCATCGAGGGTTCA 543
||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||
Sbjct 478 GATGCAGAAGCAGCAAGAGGAGAGTGGTAGGATTCGAAGAGTTATTGCATCCAGGGTTCA 537
Query 544 GGAGCCACTAAGTACTGATGGGTTTAGTGTTATTGTCAAGCACCGACGATCTGTTGTGTC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GGAGCCACTAAGTACTGATGGGTTTAGTGTTATTGTCAAGCACCGACGATCTGTTGTATC 597
Query 604 GGTAGCTTTATCGGATGACGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTATTAT 663
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 598 GGTAGCTTTATCGGATGATGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTGTTAT 657
Query 664 GCATTGGGATGTATCTTCTGGTAAAACTGACAAATACATATGGCCAAGTGATGAAATTCT 723
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 GCATTGGGATGTATCTTCTGGTAAAAGTGACAAATACATATGGCCAAGTGATGAAATTCT 717
Query 724 CAAGTCGCATGGGATGAAATTGAGGGAGCCTCGTAACAAAAATCACAGTAGAGAATCTCT 783
||||| |||||||||||| |||| |||||||| || ||||| ||||| |||||||||||
Sbjct 718 GAAGTCTCATGGGATGAAAATGAGAGAGCCTCGAAATAAAAAACACAGCAGAGAATCTCT 777
Query 784 TGCTTTAGCTGTTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGCTTTAGCTGTTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGT 837
Query 844 TCATATTTGGGATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACCGGAACAC 903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 838 TCATATTTGGGATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACAGGAACAC 897
Query 904 AGTTTCTTGTCTATGTTTCAGATACGGAACTTCAGAACTCTATTCTGGTTCATTTGATAG 963
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 CGTTTCTTGTCTATGTTTCAGATACGGAACTTCAGAAGTCTATTCTGGTTCATTTGATAG 957
Query 964 AACTGTGAAGGTGTGGAACGTAGAAGATAAAGCATTTATAACTGAAAATCATGGACACCA 1023
|| ||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||
Sbjct 958 AAATGTGAAGGTGTGGAATGTAGAAGATAAAGCGTTTGTAACTGATAATTTTGGACACCA 1017
Query 1024 GGGTGAAATTCTAGCCATTGATGCACTGAGGAAGGAGCGTGCACTTACGGTTGGAAGAGA 1083
||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1018 GGGTGAAGTTCTAGCCATTGATGTGCTGCGGAAGGAGCGTGCACTTACGGTTGGAAGAGA 1077
Query 1084 TAGAACCATGCTGTATCATAAGGTGCCTGAGAGC-ACCCGTATGATCTATCGAGCTCCTG 1142
|||||||||||||||||||||||||||||||| | | ||||||| ||||||| |||||||
Sbjct 1078 TAGAACCATGCTGTATCATAAGGTGCCTGAGA-CTAGCCGTATGGTCTATCGTGCTCCTG 1136
Query 1143 CATCGTCTCTTGAGAGCTGCTGTTTCATCAGTGATAATGAGTACCTGTCTGGTTCGGATA 1202
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CATCATCTCTTGAGAGCTGCTGTTTCATCAGTGATAATGAGTACCTGTCTGGTTCGGATA 1196
Query 1203 ATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCGTTTTCAAGAATG 1262
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1197 ATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCATTGTCAAGGATG 1256
Query 1263 CACATCAAGATATACCTGATGGGATTACCACCAATGGAATCTTAGAAAACGGTGATCATG 1322
| |||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTCATCGCGATAAAACTGATGGAATTACCACCAATGGAATCTTAGAAAACGGTGATCATG 1316
Query 1323 AACCAGTCAACAATAACTGTTCAGCAAATTCTTGGGTCAATGCAGTTGCTACTAGTAGAG 1382
|||||||||||||| ||||||| |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1317 AACCAGTCAACAATGACTGTTCTGCAAGTTCTTGGGTCAATTCAGTTGCTACTTGTAGAG 1376
Query 1383 GCAGTGATCTTGCTGCATCTGGAGCTGGTAATGGTTTTGTGCGTTTGTGGGCTGTTGAAA 1442
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1377 GTAGTGATCTTGCTGCATCTGGAGCTGGTAATGGTTTTGTGCATTTGTGGGCTGTTGAAA 1436
Query 1443 CTAATGCAATTCGACCTTTGTACGAGCTTCCACTGACTGGATTTGTCAACTCTTTGGCTT 1502
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTAATGCCATTCGAAATTTGTACGAGCTTCCACTGACTGGATTTGTCAACTCTTTGGCTT 1496
Query 1503 TTGCAAAATCGGGTAAATTTCTGATTGCCGGTGTTGGACAGGAAACTCGATTTGGAAGAT 1562
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1497 TTGCAAAATCGGGTAAATTTCTGATTGCCGGTGTTGGACAGGAAACACGATTTGGAAGAT 1556
Query 1563 GGGG-ATGCTTAAAATCTGC-GCAAAATGGTGTCGCAATACATCCCTTAAGACTGGCATA 1620
|||| | ||||||||||||| | ||||||| ||||||||||| |||||||| ||||||||
Sbjct 1557 GGGGCA-GCTTAAAATCTGCTG-AAAATGGCGTCGCAATACACCCCTTAAGGCTGGCATA 1614
Query 1621 AGTATTTCATTGGGAT-AAATGAAGCGTTGTTA-TGGATAGTTTTGAGTTGCTAAAAAGC 1678
|||||||||||||||| ||| |||||||||||| || ||| |||||||||||||||| ||
Sbjct 1615 AGTATTTCATTGGGATTAAA-GAAGCGTTGTTACTG-ATAATTTTGAGTTGCTAAAATGC 1672
Query 1679 CAAAGATCTAATCGCAAGTCATATAGGGATTACATTTCCTTGTAGCTCTTGAAGtttttg 1738
||||||| |||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 1673 CAAAGATAAAATCTT--GTCATATAGGGATTACATGTCTTTGTAGCTCTTGAAGTTTTTG 1730
Query 1739 ctcccttttttgtttgttccttgtaccatttttt-CTTAATACGAGAGATAAGAACTTAT 1797
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1731 CTCCCTTTTTTGTTTGTTCTTTGTACCATTTTTTTCTTAATACGAGAGATAAGAACTTAA 1790
Query 1798 CATTTTGAGGCTCTGAAGAATCAAAGAGGATA-ACAGTTCCCAATTTTTTCATTCTCTCA 1856
| ||||||||||||||||||||| |||||| | | ||||||||| |||| |||||||||
Sbjct 1791 CTTTTTGAGGCTCTGAAGAATCATAGAGGACAGA-AGTTCCCAAATTTT-CATTCTCTCG 1848
Query 1857 GTAAAGCTTTTTGTTTCGTTTT--CCC--AAATGTTGAAGATAAGTATATGAAAAGGCAA 1912
|| |||||||||||||| |||| ||| |||||||| ||||||||| |||||||||||
Sbjct 1849 GTTAAGCTTTTTGTTTCATTTTTTCCCCCAAATGTTGCAGATAAGTAAATGAAAAGGCAT 1908
Query 1913 ATTATT 1918
||||||
Sbjct 1909 ATTATT 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5