BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G05430.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327458 jgi|Araly1|327458|fgenesh1_pm.C_scaffold_6002678           627    3e-179


> Ahg327458 jgi|Araly1|327458|fgenesh1_pm.C_scaffold_6002678
Length=432

 Score =  627 bits (339),  Expect = 3e-179
 Identities = 404/435 (93%), Gaps = 6/435 (1%)
 Strand=Plus/Plus

Query  1    ATGACGATCAGACCAGAGTCACTAGTAGGGCCACAAGGGAACACGACGTTCTTGGAGGGA  60
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGATCAGACCAGAGTCACTGGTGGGGCCACAAGGGAACACGACGTTCTTGGAGGGA  60

Query  61   ACAACATGGTGCGTGGCTAGACCAGGTGCGACACAAGCTGAGCTACAAAGAGCTCTTGAT  120
            |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||
Sbjct  61   ACAACATGGTGCGTGGCTCGACCAGGTGCGACTCAAGCTGAGCTACAGAGAGCCCTTGAT  120

Query  121  TGGGCATGTGGGATTGGGAGGGTAGATTGCTCAGTCATTGAGAGACATGGTGATTGTTAC  180
            |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct  121  TGGGCATGTGGGATTGGGAGAGTGGATTGCTCGGTCATTGAGAGACATGGTGATTGTTAC  180

Query  181  GAACCGGACACGATCGTATCGCATGCATCTTTTGCGTTTAATGCATATTACCAAACCAAT  240
            ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct  181  GAACCAGACACGATCGTGTCGCACGCATCTTTTGCGTTTAATGCGTATTACCAAACCAAT  240

Query  241  GGGAACAATCGCATTGCTTGTTACTTCGGTGGAACAGCTACATTCACCAAGATTAACCCT  300
            |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  241  GGGAACAATCGCATTGCTTGTTACTTTGGTGGAACAGCTACACTCACCAAGATTAACCCT  300

Query  301  AGCTACGGAAAATGCTCCTATGATGCATCCAAATCGGAAGTCTCCACCGCAAGATCTTTA  360
            ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||
Sbjct  301  AGCTACGGAAAATGCTCCTATGATGTATCCAAGTCGGAAGTCTCCGCCGCAAGATCTCTA  360

Query  361  TC-AGA-GTACAAAGCTCGGTGGTTGCTGCTGATGTACATAGGAGTTTT-TTCTCTTATT  417
            || | | ||| ||  ||||||| || |||||||||||||||||| |||| || |||||||
Sbjct  361  TCGAAATGTA-AAC-CTCGGTGCTTCCTGCTGATGTACATAGGACTTTTGTT-TCTTATT  417

Query  418  AGTCGGCGAGACTAA  432
            |||||||||| ||||
Sbjct  418  AGTCGGCGAGGCTAA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5