BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05440.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895611 jgi|Araly1|895611|Al_scaffold_0006_3607 1570 0.0
Ahg490196 jgi|Araly1|490196|fgenesh2_kg.6__3330__AT4G05440.1 1057 0.0
> Ahg895611 jgi|Araly1|895611|Al_scaffold_0006_3607
Length=1011
Score = 1570 bits (850), Expect = 0.0
Identities = 964/1016 (95%), Gaps = 19/1016 (2%)
Strand=Plus/Plus
Query 61 ATGAAGGAAGACGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAGATTCAAATCC 120
||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGGAAGAAGAAGTTAATCGATGCCAGATTCAGAATTGGTATCCGAAATTCAAATCT 60
Query 121 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 120
Query 181 GATTCTGGTCCGTTTCTTC-TCCCTCATTCCGTAACAAACGAAGACGCAATGCCTAACAG 239
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCTGGTCCGTTTCTTCTTCCC-GATTCCGTAACAAACGAAGACGCAATGCCTAACAG 179
Query 240 AGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAAG-AAGCTTCAGAT---G 295
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 180 AGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAAGAAAG-TTCAGATAACG 238
Query 296 --AC-GA---ACCATTGAATCGTCCTTCTTTTCCAGAACTCGAAATCGAGATCAGAGAAT 349
|| || |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 239 AAACAGAGCCACCATTGAATCGCCCTTCATTTCCAGAACTCGAAATCGAGATCAGAGAAT 298
Query 350 CAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGGAGTTCACCAAAAGACG 409
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 299 CAATCGAAACCCTAGGCGGCACAATTATACCGAAGCTGAATTGGAGTGCACCAAAAGATG 358
Query 410 CAGCTTGGATTAGTCCATCACAGAATCTAAGCTGCACTTGTTTCAATGAGATTGCTCTCT 469
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 CAGCTTGGATTAGTCCATCACAGAATCTTAGCTGCACTTGTTTCAATGAGATTGCTCTCT 418
Query 470 TGTTTCGTTCCTCTGATTCGTTAACCCATGATCTCTTCAATGCTTATGATTCATGTAGTG 529
|||||||||| || ||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 419 TGTTTCGTTCTTCAGATTCGTTATTCCATGATCTCTGCAATGCTTATGATTCATGTATTG 478
Query 530 ACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCGTTGAGAAAATGGTACCCTTCGT 589
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 479 ATAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCTTTGAGAAAATGGTACCCTTCTT 538
Query 590 TGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAGCTTGTTGGGATTTGTC 649
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 TGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGACCTTGTTGGGATTTGTC 598
Query 650 AGCGTGAGGTAACTACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGCTC-AAGGGT 708
||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 599 AGCGTGAGGTAACAACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGATCAAAGGG- 657
Query 709 TTGATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGAATCAGAGAATTACACT 768
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 658 TTGATAGAAGAGTTCTTTGATGATCAGATTAGGTTTGAATTTGAATCACAGAATTACACT 717
Query 769 TTTGATGTTTATGTGACGAAAGAGAG-AAGAGTTAAGCTAATAGATTTCAATACTTGGTG 827
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 718 TTTGATGTTTATGTGACGAAAGAGAGAAAG-GTTAAGCTAATAGATTTCAATACTTGGTG 776
Query 828 TGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGAAGATTCATGGAGAATG 887
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TGGTTCGACTTTGCCATTGATGTATACATGGGAAGAACTTGAAAAGATTCATGGAGAATG 836
Query 888 TGATGAATTGGAATTGAGGATTGTTGAGAGCCGTCTCAGTGTGCTTCCTGGTTTGAAAAC 947
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 TGATGAATTGGAATTGAGGATTGTTGAGAGTCGTCTCAGTGTGCTTCCTGGTTTGAAAAC 896
Query 948 AGCTGTTCCTTATGATTATCTTGACGTGAGTGCTGGTAGTGGTTGGGCTCAGGTTCTTAA 1007
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 897 AGCTGTTCCTTATGATTATCTTGACGTGAGTCCTGGTAGTGGTTGGGATCAGGTTCTTAA 956
Query 1008 GATAGTGGAAGAGGAGTTTCAGAAAGACGA-TCAGAGTTCTGATGAAGTTGCTTGA 1062
||||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||
Sbjct 957 GATAGCGGAAGAGGAGTTTCAGAAAGA-GAATCAGAGTTCGGATGAATTTGCTTGA 1011
> Ahg490196 jgi|Araly1|490196|fgenesh2_kg.6__3330__AT4G05440.1
Length=945
Score = 1057 bits (572), Expect = 0.0
Identities = 643/675 (95%), Gaps = 14/675 (2%)
Strand=Plus/Plus
Query 223 GACGCAATGCCTAACAGAGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GACGCAATGCCTAACAGAGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAA 186
Query 283 GAAGCTTCAGAT---G-A--CGA---ACCATTGAATCGTCCTTCTTTTCCAGAACTCGAA 333
|||||||||||| | | || |||||||||||| ||||| |||||||||||||||
Sbjct 187 GAAGCTTCAGATAAGGAAGGAGAGCCACCATTGAATCGCCCTTCATTTCCAGAACTCGAA 246
Query 334 ATCGAGATCAGAGAATCAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ATCGAGATCAGAGAATCAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGG 306
Query 394 AGTTCACCAAAAGACGCAGCTTGGATTAGTCCATCACAGAATCTAAGCTGCACTTGTTTC 453
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 307 AGTGCACCAAAAGACGCAGCTTGGATCAGTCCATCGCAGAATCTAAGCTGCACTTGTTTC 366
Query 454 AATGAGATTGCTCTCTTGTTTCGTTCCTCTGATTCGTTAACCCATGATCTCTTCAATGCT 513
||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 367 AATGAGATTGCTCTCTTGTTTCGTTCCTCAGATTCGTTAATCCATGATCTCTGCAATGCT 426
Query 514 TATGATTCATGTAGTGACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCGTTGAGA 573
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 427 TATGATTCATGTACTGACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCTTTGAGA 486
Query 574 AAATGGTACCCTTCGTTGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAG 633
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AAATGGTACCCTTCTTTGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAC 546
Query 634 CTTGTTGGGATTTGTCAGCGTGAGGTAACTACATTTTACCCTGTTCTTCTCAATGAGAAG 693
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 CTTGTTGGGATTTGTCAGCGTGAGGTAACAACATTTTACCCTGTTCTTCTCAATGAGAAG 606
Query 694 GATTTGCTCAA-GGGTTTGATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGA 752
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GATTTGATCAAAGGGTT-GATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGA 665
Query 753 ATCAGAGAATTACACTTTTGATGTTTATGTGACGAAAGAGAGAAGAG-TTAAGCTAATAG 811
|||| ||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 666 ATCACAGAATTACACTTTTGATGTTTATGTGACGAAAGAGAGAA-AGGTTAAGCTGATAG 724
Query 812 ATTTCAATACTTGGTGTGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGA 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ATTTCAATACTTGGTGTGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGG 784
Query 872 AGATTCATGGAGAAT 886
|||| ||||||||||
Sbjct 785 AGAT-CATGGAGAAT 798
Score = 233 bits (126), Expect = 2e-60
Identities = 139/145 (96%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 919 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGAGT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTATGATTATCTTGACGTGAGT 861
Query 979 GCTGGTAGTGGTTGGGCTCAGGTTCTTAAGATAGTGGAAGAGGAGTTTCAGAAAGACGA- 1037
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 862 TCTGGTAGTGGTTGGGCTCAGGTTCTTAAGATAGCGGAAGAGGAGTTTCAGAAAGA-GAA 920
Query 1038 TCAGAGTTCTGATGAAGTTGCTTGA 1062
||||||||| | |||||||||||||
Sbjct 921 TCAGAGTTCGGTTGAAGTTGCTTGA 945
Score = 219 bits (118), Expect = 5e-56
Identities = 124/127 (98%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 61 ATGAAGGAAGACGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAGATTCAAATCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAAGGAAGAAGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAAATTCAAATCC 60
Query 121 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAGTCATTCATCAACTATCTCATCGAC 120
Query 181 GATTCTG 187
|||||||
Sbjct 121 GATTCTG 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5