BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05450.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490193 jgi|Araly1|490193|fgenesh2_kg.6__3327__AT4G05450.1 1483 0.0
> Ahg490193 jgi|Araly1|490193|fgenesh2_kg.6__3327__AT4G05450.1
Length=1050
Score = 1483 bits (803), Expect = 0.0
Identities = 975/1057 (92%), Gaps = 16/1057 (2%)
Strand=Plus/Plus
Query 1 AAAAGGTTTAAGATCTTCAAAACATGAAGAACATATGAGATTCTGAGGTTGTCTTTACAC 60
|||||||||||||||||||||||||||||||||| ||||||||| || | ||| | ||
Sbjct 1 AAAAGGTTTAAGATCTTCAAAACATGAAGAACATCTGAGATTCT--GG--G-CTTAAGAC 55
Query 61 AAAGCCGTCTCTTTTAACCTTATTCTTCATCATCGACCATACGATTACAGTCGTCTTAGT 120
||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||| ||
Sbjct 56 AAAGCCGTCTCTTTTAACCTTATTCTTCATCTTCGAGCATACGATTGCTTTCGTCTTCGT 115
Query 121 TTATGATCTTCGTAAAGTGAATAAC-TTTTCATCCCTCGATTATTCTCTATGATAAACTG 179
|| |||||||| |||||||||||| |||| |||||||| ||||||||| |||||| ||
Sbjct 116 TTGGGATCTTCGAAAAGTGAATAACTTTTTTTTCCCTCGAGTATTCTCTACGATAAATTG 175
Query 180 CGTTTAATTCTTTCaaaaaaaaaaTCATTT-CTTGCCCAAGTTTGGATCTTTTTGGCATC 238
||||| |||||||||| |||||| | |||||||||||||||||||| |||||
Sbjct 176 CGTTTGATTCTTTCAATTTTTTTTTCATTTGC-GGCCCAAGTTTGGATCTTTTTTGCATC 234
Query 239 GTTAATCTCAATTCTCAAGACAGGTAGA-T--T--GCTAGGTGCTTTAGCGGCAGTGAAC 293
|||||||||||||||||||| || |||| | | | |||| ||||| ||||||||||||
Sbjct 235 GTTAATCTCAATTCTCAAGATAGTTAGATTGGTGAGTTAGGAGCTTTGGCGGCAGTGAAC 294
Query 294 GATGATCGGTCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAGA 353
|||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 295 GATGCTCGGTCATAGGATCTCAAGATTCGGGTCTACCATTGTTAAACAGCTAGCAAGAGA 354
Query 354 GGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCACTACTTGCA 413
||||||| || ||||||| ||| || ||||||||| ||||| ||||||||||||||||
Sbjct 355 GGGATATATATCAACATATAGGAGAAGGAATCTACAACGGTCGTATGGCCACTACTTGCC 414
Query 414 GTCTTTGCCAGTGGTACCAAGGCAAGCTAGGACT-TCTCAGGAAGCCTGGTTTTTGAAGA 472
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 415 GTCTTTGCCAGTGGTACCAAGGCAAGCTAGGA-TCTCGCAGGAAGCCTGGTTTTTGAAGA 473
Query 473 GCCATAAGTTTTGTACTTCTTCAACAACTTCCTCTGAGAATGGTGATGAAGAAACTGAGA 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 GCCATAAGTTTTGTACTTCTTCAACAACTTCCTCTGAGACTGGTGATGAAGAAACTGAGA 533
Query 533 AGATAACCATAATCTTTGTTGATAAGGACGGAGAGGAAATTCCTGTTAAAGTACCAATTG 592
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGATAACCATTATCTTTGTTGATAAGGACGGAGAGGAAATTCCTGTTAAAGTACCAATTG 593
Query 593 GAATGTCAGTGCTCGAAGCTGCTCATGAAAATGATATAGACCTTGAAGGGGCTTGTGAGG 652
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 594 GAATGTCCGTGCTCGAAGCTGCTCATGAAAATGATATAGATCTTGAAGGGGCATGTGAGG 653
Query 653 CTTCTCTAGCGTGTTCAACGTGTCATGTGATTGTGATGGATACTGAATACTATAACAAAC 712
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 CTTCTCTAGCGTGTTCAACGTGTCATGTGATTGTGATGGATACGGAATACTATAACAAAC 713
Query 713 TTGAAGAACCAACAGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAA 772
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TTGAAGAACCAACTGATGAAGAGAATGATATGCTTGATCTTGCTTTTGGGCTCACAGAAA 773
Query 773 CGTCACGACTCGGATGCCAAGTCATTGCAAGACCAGAGCTAGATGGTGTGCGCTTGGCTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGTCACGACTCGGATGCCAAGTCATTGCAAGACCAGAGCTAGATGGTGTGCGCTTGGCTA 833
Query 833 TTCCTTCAGCAACAAGGAATTTCGCGGTTGACGGGTTTGTTCCAAAACCTCATTAGTTTC 892
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 834 TTCCTTCAGCCACGAGGAATTTCGCGGTTGACGGATTTGTTCCAAAACCTCATTAGTTTT 893
Query 893 CGCAGAGATTCTTCGACTTGAGGCATTAATGATCAAAGAGCTGATTCATGTTTCTATTGG 952
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 894 CGAAGAGATTCTTCGACCTGAGGCATTAAGGATCAAAGAGCTGATTCATGTTTCTATTGG 953
Query 953 AGTTTTGATGATTGCTTACCGAGAGGAAACAGTTCTTAGACCTGAGGCATGAAATGATCA 1012
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 954 AGTTTTGATGATTGCTTACCGAGAGGAAACAGTTCTTGGACCTGAGGCATTAAAGGATCA 1013
Query 1013 AAGAGATGATT-ATGTTTCTATTGGAGGACTTGATGA 1048
|| |||||||| ||||||||||||||||| |||||||
Sbjct 1014 AATAGATGATTTATGTTTCTATTGGAGGATTTGATGA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5