BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05460.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352454 jgi|Araly1|352454|fgenesh1_pg.C_scaffold_6003047 1205 0.0
Ahg490198 jgi|Araly1|490198|fgenesh2_kg.6__3332__AT4G05497.1 265 6e-70
Ahg352456 jgi|Araly1|352456|fgenesh1_pg.C_scaffold_6003049 113 2e-24
Ahg895252 jgi|Araly1|895252|Al_scaffold_0006_3248 91.6 1e-17
> Ahg352454 jgi|Araly1|352454|fgenesh1_pg.C_scaffold_6003047
Length=927
Score = 1205 bits (652), Expect = 0.0
Identities = 837/925 (90%), Gaps = 18/925 (2%)
Strand=Plus/Plus
Query 46 ATGGCTTCTTCGTCTTCACCCCCGGCGGCGATGGAGGTCGGAGAATCTACAAACTGGACG 105
|||||||||||||||| | || | |||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCTTCTTCGTCTTTA-CCTC--CGGCGATGGAGGTCGGAGAATCTAGAAACTGGACG 57
Query 106 GAGCTTCCACCGGAACTGACTTCAGCAATCCTGCACCGTCTTGGCGCGATTGAGATACTT 165
|||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 58 GAGCTTCCACCGGAACTGACGTCATTGATACTGCACCGTCTTGGCGCGATTGAGATACTG 117
Query 166 GAAAACGCTCAGAAAGTTTGCAGATCTTGGCGTCGTGTTTGTAAAGACCCATCGATGTGG 225
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 118 GAAAACGCTCAGAAAGTTTGCAGATCGTGGCGTCGCGTTTGTAAAGACCCATCGATGTGG 177
Query 226 CGTAAAATTGACATGCATAACCTCGGAGATTTGGACGACATGG-ATTACAACCTCGAGAT 284
|||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| ||
Sbjct 178 CGTAAAATCGACATGCATAACCTCGGAGATTTGGAAGACATGGAATT-CAACCTCGATAT 236
Query 285 CATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGTATTTGGTA 344
|||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| |||||
Sbjct 237 CATGTGTCGTCACGCTGTTGATCGTAGCCAGGGAGGCCTGGTTGAGATCGATATATGGTA 296
Query 345 CTTT-GGTACTGTTGATCTCCTCAATTACATCGCCCATAGGTCGAGTAATCTGAGAAGCC 403
||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 -TTTCGGTACTGATGGTCTCCTCAATTACATCGCCGATAGGTCGAGTAATCTGAGAAGCC 355
Query 404 TTAGACTTATAAGGTGTTCTCAAATTACAGACGATGGATTTGTCGAAGCAGTTGTGAAAC 463
||||||| | |||||| ||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 356 TTAGACTGACAAGGTGCTCTCAAATTACGGACGATGGACTTGTCGAAGCAGTTTTGAAAC 415
Query 464 TTCCA---CTTGAAGAACTCGAGTTGTCATACTGCTCATTTTCAGTAGAGTCTCTCAGAG 520
||||| |||||||||||||||||||||||||||||||| |||| || |||||| | ||
Sbjct 416 TTCCACTGCTTGAAGAACTCGAGTTGTCATACTGCTCATTGTCAGGAGTGTCTCTGAAAG 475
Query 521 TTGTAGGCCAGTGTTGTTTAAATATGAAGACTTTGAAGCTGAACAAGCATCCTCAAAAGG 580
|| ||||||||| |||| |||||||||||| |||||| | || | | |||||||||| |
Sbjct 476 TTCTAGGCCAGTCTTGTCCAAATATGAAGACATTGAAGTTAAAGAGGTATCCTCAAAAAG 535
Query 581 AGAATGACGATGATGCTCTAGCAATCGCTGAAACAATGCCGAAACTTCGCCATCTCCAGC 640
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 536 AGAATGACGATGATGCTCTAGCGATTGCTGAAACAATGCCTAAACTTCGCCATCTCCAGC 595
Query 641 TTTGTGGGAACGGGTTGTCAGACACCGGTTTAAACGCTATTCTTGACAATTG-CTCAAAC 699
||| ||| ||||| || ||||||||||| |||||||| |||||||||| ||| || ||||
Sbjct 596 TTTTTGGTAACGGATTATCAGACACCGGCTTAAACGCCATTCTTGACAGTTGTCT-AAAC 654
Query 700 CTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAACCTTGTTGGGGATTTGCAGAAG 759
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 655 CTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAATCTTATTGGGGATCTGCAGAAG 714
Query 760 CGGTGTTTTGAGA-GTGTCAAAGTTGTGAGACACCCTAATGACTCGATTCATGATATCGA 818
||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 715 CGGTGTTCTGAGACG-GTCAAAGTTGTGAGACACCCTAATGACTCGACTCATGATACCGA 773
Query 819 CATTGGTTCATCAGAAGACGAAGACCCTTATGACTTCTCTGATATCGATCTGATGTCAGG 878
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 774 CATTGGTTCATCAGAAGACGAATACCCTTATGGCTTCTCTGATATCGATCTGATGTCAGA 833
Query 879 TGATGA-TGATTTTGAGGGTTACTATGACTTCTCAGGTGCTAGTGACTTTTCTGACTATG 937
|||| | ||| ||||| | |||||||||| || ||||||||||||||| |||||||||||
Sbjct 834 TGAT-ACTGAGTTTGATGATTACTATGACCTCACAGGTGCTAGTGACTATTCTGACTATG 892
Query 938 ACCAGTTTGATTTCTA-GATG-CAT 960
|||||||||||| ||| |||| |||
Sbjct 893 ACCAGTTTGATTACTATGATGACAT 917
> Ahg490198 jgi|Araly1|490198|fgenesh2_kg.6__3332__AT4G05497.1
Length=729
Score = 265 bits (143), Expect = 6e-70
Identities = 530/709 (75%), Gaps = 57/709 (8%)
Strand=Plus/Plus
Query 71 CGGCGATGGAGGTCGGAGAATCTACAAACTGGACGGAGCTTCCACCGGAACTGACTTCAG 130
|||||||| | |||||| |||| ||||||||| ||||| || ||||||||||| |||
Sbjct 32 CGGCGATGAAAAACGGAGAGTCTAGAAACTGGACAGAGCTACCGCCGGAACTGACGTCAT 91
Query 131 CAATCCTGCACCGTCTTGGCGCGATTGAGATACTTGAAAACGCTCAGAAAGTTTGCAGAT 190
| |||||||||||||| || ||||||||||||||| ||||||||||| ||| |||||||
Sbjct 92 CGATCCTGCACCGTCTCGGTGCGATTGAGATACTTCTAAACGCTCAGAGAGTATGCAGAT 151
Query 191 CTTGGCGTCGTGTTTGTAAAGACCCATCGATGTGGCGTAAAATTGACATGCATAA-CCTC 249
| ||||| || | ||||||||||||||||||||||||||||| ||||| | || || |
Sbjct 152 CGTGGCGACGCATCTGTAAAGACCCATCGATGTGGCGTAAAATCGACATAAA-AATCC-C 209
Query 250 GGAGAT-TTGGACGACATGGATT-ACAACCTCGAGATCATGTGCCGTCACGCTGTTGATC 307
| | | || || ||| || || || | |||||| | ||||||||| ||| |||||||
Sbjct 210 GAAAAAATTCGAAGACTTGT-TTCACGATCTCGAGGCCGTGTGCCGTCGCGCCGTTGATC 268
Query 308 GT-AGCCAGGGAGGCTTGGTTGATATCGGTATTTG-GTACTTTGGT-A-CTGTTGATCTC 363
| || ||||||||||| |||| ||| ||| | | |||| ||| | | || ||||
Sbjct 269 -TCAGTAAGGGAGGCTTGATTGAGATCAACATT-GAGCACTT-GGTGAACACTTC-TCTC 324
Query 364 CTCAATTACATCGCCCATAGGTCGAGTAATCTGAGAAGCCTTAGACTTATA-AG-GTGTT 421
||||||||||||||| | || || |||||||||| | | ||| || || | | ||| |
Sbjct 325 CTCAATTACATCGCCGACAGATCAAGTAATCTGATACGGCTTGGAGTTGTTGACTGTGGT 384
Query 422 CTCAA-A-TTA-CAGACGATGGATTTGTCGAAGCAGTTGTGAAACTTCC-A---CTTGAA 474
| || | ||| ||| |||| ||||||||||||| |||| || || | ||||||
Sbjct 385 C-CAGTAGTTAGCAG----TGGAGTTGTCGAAGCAGTCATGAAGCT-CCTATTACTTGAA 438
Query 475 GAACTCGAG-TTGTCATACT-G-C-TCATTTTCAGTAGA-G-TCTCTCAGAGTTGTAGGC 528
||| | ||| || ||||| | | ||| | || | | | | | | | ||||||||||
Sbjct 439 GAAATTGAGATTA-CATACAAGTCATCAATGAGAGAACAAGAT-T-TGAAAGTTGTAGGC 495
Query 529 CAGTGTTGTTTAAATATGAAGACTTTGAAGCTGAACAAGCATCC-TCAA---AAG-GA-G 582
|||| |||| |||| ||| ||| || ||||| ||| | || | | ||| | |
Sbjct 496 CAGTCTTGTCCAAATCTGAGGACGTTAAAGCTAAACT-GTATGGGTGATTTTAAGTGTTG 554
Query 583 AATGACGATGATGCTCTAGCAATCGCTGAAACAATGCC-GAAACTTCGCCATCTCCAGCT 641
||| | | |||||||||||| |||||||||||||| | |||||||| ||||||||
Sbjct 555 --TGATAAGGTTGCTCTAGCAATTGCTGAAACAATGCCCGGT-CTTCGCCACCTCCAGCT 611
Query 642 TTGTG-GGAACGGGTTGTCAGACACCGGTTTAAACGCTATTCTTGACAA-TTG-C-TCAA 697
|| | ||||||| || || ||||| || || ||||| |||||||| | ||| | |||
Sbjct 612 TT-TCAGGAACGGATTATCGGACACGGGCTTGAACGCCATTCTTGA-AGGTTGTCCTCA- 668
Query 698 ACCTGGAACATCTTGATTTACGCCGGTGTTTCAATGTTAACCTTGTTGG 746
||||||| | || ||||||| | |||||| || |||||||||||||
Sbjct 669 -CCTGGAAAACCTCGATTTACACAAGTGTTTAAACATTAACCTTGTTGG 716
> Ahg352456 jgi|Araly1|352456|fgenesh1_pg.C_scaffold_6003049
Length=417
Score = 113 bits (61), Expect = 2e-24
Identities = 187/246 (76%), Gaps = 16/246 (7%)
Strand=Plus/Plus
Query 96 AAACTGGACGGAGCTTCCACCGGAACTGACTTCAGCAATCCTGCA-CCGTCTTGGCGCGA 154
||||||| |||| ||||| |||| |||| || |||||| | ||||||| ||| |
Sbjct 75 AAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTG-ATCCGTCTTAGCGTGG 133
Query 155 TTGAGATACTTGAA-AACGCTCAGAAAGTTTGCAGATCTTGGCGTCGTGTTTGTAAAGAC 213
||| || | |||| ||||||||||| || |||||| | ||||| || | ||||||||
Sbjct 134 CTGATATTC-TGAACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCATCTGTAAAGAA 192
Query 214 CCATCGATGTGGCGTAAAATTGACATGCATAA-CC---TCGGAGATTTGGACGACATGGA 269
|| ||||||||||| ||||| |||||| | || || || |||| | || || || |
Sbjct 193 CCTTCGATGTGGCGGAAAATCGACATG-AGAAGCCTGATCAGAGA-TAGG-GGA-AT-GC 247
Query 270 T-TACAACC-TCGAGATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTT 327
| || || | | ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 248 TCGAC-CCCTTGGCTATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGTGGTTTGGTC 306
Query 328 GATATC 333
|| |||
Sbjct 307 GAAATC 312
> Ahg895252 jgi|Araly1|895252|Al_scaffold_0006_3248
Length=1452
Score = 91.6 bits (49), Expect = 1e-17
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 277 CTCGAGATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGT 336
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 678 CTCGATATCATGTGTCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGAGATCAAC 737
Query 337 ATTTGGTACT 346
|||||| |||
Sbjct 738 ATTTGGAACT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5