BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05490.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352459 jgi|Araly1|352459|fgenesh1_pg.C_scaffold_6003052 734 0.0
Ahg887536 jgi|Araly1|887536|Al_scaffold_0320_1 204 1e-51
> Ahg352459 jgi|Araly1|352459|fgenesh1_pg.C_scaffold_6003052
Length=612
Score = 734 bits (397), Expect = 0.0
Identities = 539/608 (89%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 52 ATGAAAGGCGAAGAAAAGCCTTCAAACTGGGCGGAGCTACCCCCGGATTTGCTGTCTTCA 111
|||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAAAGGTGAAGAAGAGCCATCAAACTGGGCGGAGCTACTGCCGGATTTGCTGTCTTCG 60
Query 112 ATTCTACTCCGTCTTAGCCCATTGGAGATACTTGAAAACGCTCGGAAAGTATGCAGATCG 171
||||||||||| ||| |||| || ||||||||| ||||||||| ||||||||||||| ||
Sbjct 61 ATTCTACTCCGGCTTGGCCCGTTAGAGATACTTCAAAACGCTCAGAAAGTATGCAGACCG 120
Query 172 TGGCGACGCGTCTCTAAAGACCCATTGATTTGGCGTAGAATCGACATGAGAAACCTGAGA 231
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 121 TTGCGACGCGTCTCTAAAGACCCATGGATTTGGCGTAAAATCGACATGAGAAACCTGAGA 180
Query 232 AGATTGTACTGTATTTACGCTATGGAAGCCTGTTGTCGTCACGTCGTTGATCTCAGCCAG 291
| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAATTATACTGTATTTTCGATATGGAAGCCTGTTGTCGTCACGTCGTTGATCTCAGCCAG 240
Query 292 GGAGGCTTGCTTGAGTTCAACATTGATCAGTGGCGCTTTCAGACCACTTCTCTACTCAAC 351
||||| ||||||||| |||||||||||||||||| ||| ||| ||||| ||| |||||
Sbjct 241 GGAGGGTTGCTTGAGATCAACATTGATCAGTGGCAATTTGAGAACACTTGTCTCCTCAAT 300
Query 352 TACATGGCCGAGAGATCAAGTAATCTGAGACGTCTTAGGGTTAAAGGTGGTCAAATAACG 411
||||| ||||| |||||||||||||||||||| ||||| ||| |||||| |||||||||
Sbjct 301 TACATCGCCGACAGATCAAGTAATCTGAGACGCCTTAGACTTAGAGGTGGCCAAATAACG 360
Query 412 AGTGTTGGAATTTTTGAAGCAATCGTGAAACTGCCATTGCTTGAAGAACTCGAGCTTTTG 471
|| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 361 AGCGTTGGAATTTTTGTAGCAGTCGTGAAACTTCCATTGCTTGAAGAACTCGAGCTTTTG 420
Query 472 TACTGCTCAATCGAAGAAGAGCATTTCAAAACTATAGGCCAGGCTTGTCCAAATCTGAAG 531
|||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 421 CACTGCTCAATCGAAGATGAGCATTTGAAAGCTATAGGCCAGTCTTGTCCAAATCTGAAG 480
Query 532 ACATTGAAACTA-G-T--G-GGGTTTT-GGAGTCATCTAAATGAGAGTGACAATGATGCT 585
| |||||| ||| | | | ||||| || || |||||||| ||| |||||| |||||
Sbjct 481 ATATTGAAGCTAAGCTCAGTGGGTTACAGGCTTCCTCTAAATGTGAGAGACAATAATGCT 540
Query 586 CTAGCAATTGCTGACACCATGCCTGGTCTTCTCCACCTCCAGCTTATTAGTAACGGACTA 645
|||||||||||||| || ||| |||||||||||||||||||||||||| | ||| ||||
Sbjct 541 CTAGCAATTGCTGAAACAATGTCTGGTCTTCTCCACCTCCAGCTTATTGGGAACACACTA 600
Query 646 A-CCAACA 652
| ||||||
Sbjct 601 AACCAACA 608
> Ahg887536 jgi|Araly1|887536|Al_scaffold_0320_1
Length=915
Score = 204 bits (110), Expect = 1e-51
Identities = 177/209 (85%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 578 ATGATGCTCTAGCAATTGCTGACACCATGCCTGGTCTTCTCCACCTCCAGCTTATTAGTA 637
||||||| |||||||| ||||| | |||||| || | |||||||||||||||| | |
Sbjct 605 ATGATGCCCTAGCAATCGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATTTGGA 664
Query 638 ACGGACTAACCAACATTGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAATG-C 696
||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 665 ACGGACTGACCAACACTGGCTTGAATGTCATTCTCGACGGTTGTCCTCACCTGGAA-GAC 723
Query 697 CTTGATTTACGCCAGTGTTTCAACATTAACCTTTTTGGGGAT-TTGGAG-AGACAATGTT 754
|||||| | ||| |||||||||||||||| ||| | ||| || || ||| || | |||||
Sbjct 724 CTTGATGTGCGCAAGTGTTTCAACATTAAACTTGTCGGGAATCTT-GAGAAG-CGATGTT 781
Query 755 TGGAGAGGATCAAAGATTTTAGATGCCCC 783
|||||||||||||||| || ||| |||||
Sbjct 782 TGGAGAGGATCAAAGAGTTGAGACGCCCC 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5