BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05497.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490198 jgi|Araly1|490198|fgenesh2_kg.6__3332__AT4G05497.1 944 0.0
Ahg352454 jgi|Araly1|352454|fgenesh1_pg.C_scaffold_6003047 276 2e-73
> Ahg490198 jgi|Araly1|490198|fgenesh2_kg.6__3332__AT4G05497.1
Length=729
Score = 944 bits (511), Expect = 0.0
Identities = 659/729 (90%), Gaps = 15/729 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCGTCGTCTTCTTCCCCTTTCCCTCAGGCTATGAAGAACGGAGAGTATAGAAAC 60
|||||||||||||||||||||||||| |||| ||| ||||| |||||||||| |||||||
Sbjct 1 ATGTCTTCGTCGTCTTCTTCCCCTTTGCCTCCGGCGATGAAAAACGGAGAGTCTAGAAAC 60
Query 61 TGGGCGGAGCTACCGCCGGAACTGACGTCATCGATCCTGCTCCGACTCGGTGCGATTGAG 120
||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 61 TGGACAGAGCTACCGCCGGAACTGACGTCATCGATCCTGCACCGTCTCGGTGCGATTGAG 120
Query 121 ATACTTCAAAACGCTCAGAGAGTGTGCAAATCGTGGCGACGCGTCTGTCAAGACCCATCG 180
||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||
Sbjct 121 ATACTTCTAAACGCTCAGAGAGTATGCAGATCGTGGCGACGCATCTGTAAAGACCCATCG 180
Query 181 ATGTGGCGTAAAATCGACATCAGAATCAAGGAAAACTTGGTAAACTCGGTAGAATTGTTT 240
|||||||||||||||||||| | |||| | ||| ||| || | ||| ||||||
Sbjct 181 ATGTGGCGTAAAATCGACATAAAAATC-CCG-AAA------AAATTC-GAAGACTTGTTT 231
Query 241 TACGTTATCGAGCCCCTGTGCTGTCGCGCCGTTGATCTCAGCCAGGGAGGCTTGCTTGAG 300
||| | ||||| || ||||| ||||||||||||||||||| ||||||||||| |||||
Sbjct 232 CACGATCTCGAGGCCGTGTGCCGTCGCGCCGTTGATCTCAGTAAGGGAGGCTTGATTGAG 291
Query 301 ATCAACATTGATTACTTGGTGAACACTTCGT-TCCTCAATTACATTGCCGACAGATCAAG 359
||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 292 ATCAACATTGAGCACTTGGTGAACACTTC-TCTCCTCAATTACATCGCCGACAGATCAAG 350
Query 360 TAATCTGAGACGGCTTGGAGTTGTTGACTGTGCTCCAGTA-TTGAGCAGGGGAGTTGTCG 418
|||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 351 TAATCTGATACGGCTTGGAGTTGTTGACTGTGGTCCAGTAGTT-AGCAGTGGAGTTGTCG 409
Query 419 AAGCAG-CGATGAAGCTCCCATTGCTTGAAGAACTTGATATTACATACAAGTCATCAATC 477
|||||| | |||||||||| ||| ||||||||| |||| ||||||||||||||||||||
Sbjct 410 AAGCAGTC-ATGAAGCTCCTATTACTTGAAGAAATTGAGATTACATACAAGTCATCAATG 468
Query 478 AGAGAACAAGAGTTAAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACATTAAAGCTA 537
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 AGAGAACAAGATTTGAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACGTTAAAGCTA 528
Query 538 AACTGTACGGGTGATGTTAAGTGTTGTGATAAGGTTGCTCTAGCAATCGCTGAAACAATG 597
||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 AACTGTATGGGTGATTTTAAGTGTTGTGATAAGGTTGCTCTAGCAATTGCTGAAACAATG 588
Query 598 CCCGGTCTTCGCCACCTCCAGCTTTTCAGGAACGGATTATCCGAGACGGGCTTGAACGCC 657
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 589 CCCGGTCTTCGCCACCTCCAGCTTTTCAGGAACGGATTATCGGACACGGGCTTGAACGCC 648
Query 658 ATTCTTGAAGGTTGTCCTCACCTGAAAAACCTCGGGTTACACCAGTGTTTAAACATTAAC 717
|||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct 649 ATTCTTGAAGGTTGTCCTCACCTGGAAAACCTCGATTTACACAAGTGTTTAAACATTAAC 708
Query 718 ATTGTAGGT 726
|||| |||
Sbjct 709 CTTGTTGGT 717
> Ahg352454 jgi|Araly1|352454|fgenesh1_pg.C_scaffold_6003047
Length=927
Score = 276 bits (149), Expect = 2e-73
Identities = 539/718 (75%), Gaps = 63/718 (9%)
Strand=Plus/Plus
Query 14 CTTCTTCCCCTTTCCCTCAGGCTATGAAGAACGGAGAGTATAGAAACTGGGCGGAGCTAC 73
||||||| |||| |||| ||| ||| || |||||| | |||||||||| ||||||| |
Sbjct 5 CTTCTTCGTCTTTACCTCCGGCGATGGAGGTCGGAGAATCTAGAAACTGGACGGAGCTTC 64
Query 74 CGCCGGAACTGACGTCATCGATCCTGCTCCGACTCGGTGCGATTGAGATACTTCAAAACG 133
| |||||||||||||||| ||| |||| ||| || || |||||||||||||| ||||||
Sbjct 65 CACCGGAACTGACGTCATTGATACTGCACCGTCTTGGCGCGATTGAGATACTGGAAAACG 124
Query 134 CTCAGAGAGTGTGCAAATCGTGGCGACGCGTCTGTCAAGACCCATCGATGTGGCGTAAAA 193
|||||| ||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 125 CTCAGAAAGTTTGCAGATCGTGGCGTCGCGTTTGTAAAGACCCATCGATGTGGCGTAAAA 184
Query 194 TCGACAT-CAGAATCAAGGAAAACTTGGTAA-AC-TCGGTAGAATTGTTT-TACGTTATC 249
||||||| || || | ||| | |||| || || | || | | || | || ||||
Sbjct 185 TCGACATGCATAACCTCGGAGAT-TTGG-AAGACAT-GG-A-A-TTCAACCT-CGATATC 237
Query 250 GA-GCCCCTGTGCTGTCGCGCCGTTGATC-TCAGCCAGGGAGGCTTGCTTGAGATCAACA 307
| | ||| | ||| ||| ||||||| | |||||||||||| || |||||||| | |
Sbjct 238 -ATG----TGT-C-GTCACGCTGTTGATCGT-AGCCAGGGAGGCCTGGTTGAGATCGATA 289
Query 308 T-TGATTACTT-GGTGAACACTTCGT-TCCTCAATTACATTGCCGACAGATCAAGTAATC 364
| || | | || ||| | | | || ||||||||||||| ||||| || || |||||||
Sbjct 290 TATGGT-ATTTCGGT-A-CTGATGGTCTCCTCAATTACATCGCCGATAGGTCGAGTAATC 346
Query 365 TGAGACGGCTTGGAGTTGTTGACTGTGCTC-CAGTATTGA-GCAGG--GGAGTTGTCGAA 420
||||| | ||| || | | | |||||| || ||| | | | | ||| ||||||||
Sbjct 347 TGAGAAGCCTTAGACT-GACAAG-GTGCTCTCAA-ATT-ACGGACGATGGACTTGTCGAA 402
Query 421 GCAGCGATGAAGCTCCCATTGCTTGAAGAACTTGA-TAT-TACATACAAG-TCATCAATC 477
|||| |||| || ||| ||||||||||||| || | | | ||||| | |||| ||
Sbjct 403 GCAGTTTTGAAACTTCCACTGCTTGAAGAACTCGAGT-TGT-CATACT-GCTCATTG-TC 458
Query 478 AGAGAACAAGAGT-TAAAAGTTGTAGGCCAGTCTTGTCCAAATCTGAGGACATTAAAGCT 536
|| || | | | |||||| |||||||||||||||||||| ||| |||||| ||| |
Sbjct 459 AG-GAGT--GTCTCTGAAAGTTCTAGGCCAGTCTTGTCCAAATATGAAGACATTGAAGTT 515
Query 537 AAACTGTACGGGTGATGTT-AA---GTGTTGTGATAAGGTTGCTCTAGCAATCGCTGAAA 592
||| | | || | || | || | | ||| | | ||||||||| || |||||||
Sbjct 516 AAA--G-A-GG-T-ATCCTCAAAAAGAGAA-TGACGATGATGCTCTAGCGATTGCTGAAA 568
Query 593 CAATGCCCGGTCTTCGCCACCTCCAGCTTTTCAGG-AACGGATTATCCGAGACGGGCTTG 651
||||||| |||||||| ||||||||||| || ||||||||||| || || |||||
Sbjct 569 CAATGCCTAAACTTCGCCATCTCCAGCTTTTT-GGTAACGGATTATCAGACACCGGCTTA 627
Query 652 AACGCCATTCTTGA-AGGTTGTCCTCA-CCTGAAAAACCTCGGGTTACACCAGTGTTT 707
|||||||||||||| || ||||| | | |||| || | || | |||| || ||||||
Sbjct 628 AACGCCATTCTTGACAG-TTGTC-TAAACCTGGAACATCTTGATTTACGCCGGTGTTT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5