BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05500.1
Length=2506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943335 jgi|Araly1|943335|scaffold_603879.1 399 4e-110
Ahg943323 jgi|Araly1|943323|scaffold_603867.1 394 2e-108
Ahg895252 jgi|Araly1|895252|Al_scaffold_0006_3248 110 7e-23
> Ahg943335 jgi|Araly1|943335|scaffold_603879.1
Length=945
Score = 399 bits (216), Expect = 4e-110
Identities = 311/355 (88%), Gaps = 13/355 (4%)
Strand=Plus/Plus
Query 51 ATACGATGATGAACCTCTAGCAATTGCTGAAACCATGCCCGAATTACGAC-ACCTCAAGC 109
||| ||||||||| ||||||||||||||||||| ||||||| |||||| | ||||| |||
Sbjct 601 ATATGATGATGAAGCTCTAGCAATTGCTGAAACTATGCCCGGATTACG-CTACCTCGAGC 659
Query 110 TTTTTGGGAACGGACTGACCAACTTAAGATTGGAAGCCATTCTTGACAACTGTGTTCACT 169
|||||||||||||||| ||||||| | |||||||||| ||||| ||||||||| ||||||
Sbjct 660 TTTTTGGGAACGGACTAACCAACTCAGGATTGGAAGCTATTCTGGACAACTGTCTTCACT 719
Query 170 TGGTACATCTTGATTTACGCCGCTGCTTCAACATTAACCTTCTCGGGGATCTCGAGAAGC 229
||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 720 TGGAACATCTTGATTTACGCCGCTGCTTCAACATTTACCTTGTCGGGGATCTCGAGAAGC 779
Query 230 GCTGTTCTGAGAGGATCAGAGATTTGAGACGCCCTGATGACTCAACCGCTGATTCCCCTT 289
||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 780 GCTGTTCTGAGAGTTTCAGAGATTTGAGACGCCCTGAGGACTCAACTGCTGATTCCCCAT 839
Query 290 TTGATGCCTCTTCCGATATATATT-CAGCAGGAGAAGACGACTACGACTTTTACTCAGAT 348
|||||||| |||||| ||| |||| ||| |||||||||| |||| ||| |||||||
Sbjct 840 TTGATGCCACTTCCGTTAT-TATTTCAGAAGGAGAAGACAACTA----TTT--CTCAGAT 892
Query 349 GATAGC-GATGTATATAACCCTTATTATGACTAAATAAGGGTACGTTATCTGATC 402
||| | || ||||||| |||||||||||||| ||| || |||| | |||||||
Sbjct 893 GATT-CTGACCTATATAATCCTTATTATGACTAGATA-GGATACGCTGTCTGATC 945
> Ahg943323 jgi|Araly1|943323|scaffold_603867.1
Length=1876
Score = 394 bits (213), Expect = 2e-108
Identities = 372/447 (83%), Gaps = 18/447 (4%)
Strand=Plus/Plus
Query 1982 TCAAGTAATCTGAAAAGCCTTGGACTTGTAAGGTGCTTTCCAATAACAGATGAGGGAGTT 2041
||||||||||||| ||||||| |||||||||| ||| || |||||||||| ||||||||
Sbjct 357 TCAAGTAATCTGAGAAGCCTTAGACTTGTAAGATGCCATCAAATAACAGATAAGGGAGTT 416
Query 2042 GCCAAAGCAGTT-TCGAAAGTACCGTTGCTTGAATACCTTGAGGTTTCATACTGCTTGTT 2100
||| |||||||| | |||| | || ||||||||| |||| ||||| || ||||||| ||
Sbjct 417 GCCGAAGCAGTTGT-GAAACTTCCATTGCTTGAAGACCTCGAGGTCTCGTACTGCTCATT 475
Query 2101 TTCAGGAGAGTCTCTGAGAGATATAGGCCGGTCTTGTCCGA-ATCTGAAGACACTGAAGC 2159
||||||||||| | ||| | | |||| | ||||||||| | |||||| |||| ||||||
Sbjct 476 TTCAGGAGAGTGTGTGACTGTTGTAGGTCAGTCTTGTCC-ACATCTGACGACATTGAAGC 534
Query 2160 TAAACCGAGCC--CCT-GAAATC-ATGTTT-T--CAAATAGTGGGTTTGATGATAATGCC 2212
|||||| ||| ||| | || | |||| | ||||| || | |||| ||||||||
Sbjct 535 TAAACC--GCCGACCTCG-CGTCGA-GTTTGTAATAAATA-TGCG--TGATCATAATGCC 587
Query 2213 AAAGCAATTGCAGAAAGCATGCCTGAACTACGCCACCTCCAGCTTTTAGGGAACGGGCTA 2272
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 588 ATAGCAATTGCAGAAAGCATGCCTGAGCTACGCCACCTCCAGCTTTTAGGGAACGCACTA 647
Query 2273 ACCAATAAGGGCTTGAACGCCATTCTTGATGGTTGTCCTCACCTGGAACACCTTGATTTA 2332
||||| | |||||||||||||||||||| ||||| |||||||||| || |||||||||
Sbjct 648 ACCAACACTGGCTTGAACGCCATTCTTGACAGTTGTACTCACCTGGACCATCTTGATTTA 707
Query 2333 CGCCAGTGTTTCAACATCAACCTTGTTGGGGATCTCAAGAAACGATGTTTTGAGAGGATC 2392
|||||||||| ||| || |||||| | | |||||||| ||| | |||| |||| ||||||
Sbjct 708 CGCCAGTGTTACAATATTAACCTTCTCGAGGATCTCATGAAGCAATGTGTTGAAAGGATC 767
Query 2393 AAAGACTTGAGATGCCCCAATGACTCA 2419
||| | |||||||||||||||||||||
Sbjct 768 AAATATTTGAGATGCCCCAATGACTCA 794
> Ahg895252 jgi|Araly1|895252|Al_scaffold_0006_3248
Length=1452
Score = 110 bits (59), Expect = 7e-23
Identities = 103/124 (83%), Gaps = 4/124 (3%)
Strand=Plus/Plus
Query 2200 TGATGATAATGCCAAAGCAATTGCAGAAAGCATGCCTGAACTACGCCACCTCCAGCTTTT 2259
||||||| ||||| || ||| || ||||||||||| ||||||||||||||||| | |||
Sbjct 1302 TGATGATTATGCCCTAGAAATCGCTGAAAGCATGCCAGAACTACGCCACCTCCA-CCTTT 1360
Query 2260 A-GGGAACGGGCTAACCAATA-AGGGCTTGAACGCCATTCTTGATGGTTGTCCTCACCTG 2317
| |||||| |||| ||| | ||||| | |||||||||||||||||||||||||||
Sbjct 1361 ATGGGAACAACCTAAGTGATACA-CGCTTGTATGCCATTCTTGATGGTTGTCCTCACCTG 1419
Query 2318 GAAC 2321
||||
Sbjct 1420 GAAC 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94463807600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5