BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05530.1
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490068 jgi|Araly1|490068|fgenesh2_kg.6__3202__AT4G05530.1 1304 0.0
> Ahg490068 jgi|Araly1|490068|fgenesh2_kg.6__3202__AT4G05530.1
Length=847
Score = 1304 bits (706), Expect = 0.0
Identities = 778/813 (96%), Gaps = 3/813 (0%)
Strand=Plus/Plus
Query 28 aaaacaatcattggaagaagc-aaaagaaaaaaaaaaGATTGAAATGGAGAAGAAGCTAC 86
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| |||
Sbjct 1 AAAACAATCATTGGAAGAAGCAAAAAAAAAAAAAAAAGATAGAAATGGAGAAGAAGGTAC 60
Query 87 CGAGAAGATTGGAAGGCAAAGTCGCGATTGTGACGGCTTCGACGCAAGGGATTGGTTTCG 146
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 61 CGAGAAGATTGGAAGGTAAAGTCGCAATTGTGACAGCTTCGACGCAAGGAATTGGCTTCG 120
Query 147 GAATCACTGAGCGTTTCGGTCTCGAAGGCGCTTCCGTCGTCGTCTCTTCCCGCAAACAGG 206
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAATCATTGAACGTTTCGGTCTCGAAGGCGCTTCCGTCGTCGTCTCTTCCCGCAAACAGG 180
Query 207 CAAATGTTGATGAGGCAGTAGCAAAACTCAAATCCAAAGGGATTGATGCATATGGAATCG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAATGTTGATGAGGCAGTAGCAAAACTCAAATCCAAAGGGATTGATGCATATGGAATCG 240
Query 267 TCTGTCATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAGAAAT 326
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 241 TCTGTCATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACTGTACAGAAAT 300
Query 327 ATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCTACAGACCCAATCT 386
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 ATGGGAAGATAGATATCGTTGTCTGTAACGCCGCTGCCAATCCATCTACAGACCCAATCT 360
Query 387 TGTCTAGCAAAGAAGCTGTTCTTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATAC 446
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 361 TGTCTAGTAAAGAAGCTGTTCTTGACAAGCTATGGGAAATCAATGTCAAATCCTCTATTC 420
Query 447 TTCTCCTGCAGGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTT 506
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TTCTCCTTCAGGATATGGCTCCTCACCTAGAGAAGGGTTCTTCTGTTATCTTCATAACTT 480
Query 507 CTATTGCTGGATTTTCA-CCACAAGGAGCTATGGCTATGTATGGTGTCACTAAAACTGCT 565
|||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 481 CTATTGCTGGATTT-CAACCACAAGGAGCCATGGCTATGTATGGGGTCACTAAGACTGCT 539
Query 566 CTTCTCGGACTAACTAAGGCGCTTGCTGCTGAGATGGCCCCCGATACACGTGTGAACGCA 625
|||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||
Sbjct 540 CTTCTCGGACTAACCAAGGCACTTGCTGCTGAGATGGCTCCTGATACACGTGTGAATGCA 599
Query 626 GTTGCACCCGGTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTG 685
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 600 GTTGCACCCGGTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGAAGCTCCGAAGTG 659
Query 686 AGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCT 745
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGAAGGCATCGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCT 719
Query 746 GCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACATCACTGGAGAAACTTTGGTT 805
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 GCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACATCACGGGAGAAACTTTGGTC 779
Query 806 GTCGCTGGAGGAATGCCTTCAAGACTCTAAACA 838
|||||||||||||||||||||||||||||||||
Sbjct 780 GTCGCTGGAGGAATGCCTTCAAGACTCTAAACA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41973331617
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5