BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05540.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895489 jgi|Araly1|895489|Al_scaffold_0006_3485 2785 0.0
Ahg947346 jgi|Araly1|947346|scaffold_703575.1 763 0.0
Ahg891304 jgi|Araly1|891304|Al_scaffold_0007_3290 752 0.0
Ahg493692 jgi|Araly1|493692|fgenesh2_kg.7__3125__AT5G37160.1 691 0.0
Ahg355656 jgi|Araly1|355656|fgenesh1_pg.C_scaffold_7002829 667 0.0
> Ahg895489 jgi|Araly1|895489|Al_scaffold_0006_3485
Length=2448
Score = 2785 bits (1508), Expect = 0.0
Identities = 1887/2066 (91%), Gaps = 41/2066 (2%)
Strand=Plus/Plus
Query 30 CGTGGATGACTTAAACCCACTGATTCTTGCG-TATGTGTTCTCTGTTGGAGATGAGCTAC 88
||||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||
Sbjct 381 CGTGGATGACTTAAACCCACTGATTCTTG-GATATGTGTTCTCTGTTGAAGATGAACTAC 439
Query 89 ATTTCTCTGTTCATTCCTCTAAATCTATATCCATTGATGAGCAATATTCGTTTCGTTCGG 148
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 440 ATTTCTCTGTTCATTCCTCCAAAACTATATCCATTGATGAGCAATTTTCGTTTCGTTCGG 499
Query 149 GtttttttCTTAT-ATACTTAACCACAAACACTCGTATCTGGAAGGCTTTGCACAACGGA 207
|| ||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GTGTTTTTCTCATGA-ATTTAACCACAAACACTCGTATCTGGAAGGCTTTGCACAACGGA 558
Query 208 GATGGAAACTTGAGTCTCATCAAGAGTGTCCTTCAAGCAAATACCGCGGATACAGAGCAA 267
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 GATGGCAACTTGGGTCTCATCAAGAGTGTCCTTCAGGCAAATACCGCGGATACAGAGCAC 618
Query 268 TCTGTTTCTTCTAGGAATTGGGGGAATCATGTGT-T-AGATATTATACGATCAGCGAATT 325
|||||||||||||||||||||||||| | |||| | |||||||| || || || || |
Sbjct 619 CCTGTTTCTTCTAGGAATTGGGGGAAT-A-GTGTATGGGATATTATGCGTTCTGCAAAGT 676
Query 326 TGAACTCTTCTCAAGAATCTGCAATTTTG-GCTTGCCTT-GAGACAAGAGAA-ATCCGCG 382
||||| ||||||| ||||||||||||||| | ||| ||| ||||||||| || | || |
Sbjct 677 TGAACCCTTCTCAGGAATCTGCAATTTTGAG-TTG-CTTGGAGACAAGA-AATTTACGTG 733
Query 383 ACAAGACTAGTGTGAAACTGATATGGGGACCCCCTGGTACCGGTAACACAAAGACAGTCG 442
|||||||||||||||||||||| |||||||| ||||||||||| || ||||| ||||| |
Sbjct 734 ACAAGACTAGTGTGAAACTGATTTGGGGACCACCTGGTACCGGCAAGACAAAAACAGTTG 793
Query 443 CTACTCTTCTGTTTGCTCTTCTCAGCCTAAGTTGCAAAACAGTTGTGTGCACTCCTACAA 502
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 794 CTACTCTTCTGTTTGCTCTTCTCAACCTAAGTTGCAAAACAGTTGTGTGTGCTCCTACAA 853
Query 503 ACACGGCTGTAGTAGCAGTTGCATCAAGGCTCTTGGCGCTATTTAAGGAATCTTCTTCAA 562
||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 854 ACACGGCTGTAGTAGAAGTTGCATCGAGGCTCTTGGCGTTATTTAAGGAAACTTCTTCAT 913
Query 563 CAGAACATTCTACTTACGGACTTGGCAATATTGTTTTAGTCGGAAACCGAGTCCGAATGG 622
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 914 CAGAACATTCTACTTACGGGCTTGGGAATATTGTTTTAGTCGGAAACCGAGTCCGAATGG 973
Query 623 GGATAGACGAAAGGGGGAATGATGATCTCCTCAACGTGTTTCTTGATGATCGCATTAGTA 682
|||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 974 GGATAGACGACAGGGGGAATGATGATCTCCTCAACGTGTTTCTTGAACATCGAATTAGTA 1033
Query 683 AATTGGGTGAACTGTTTTCGCCATCGAATGAATGGGAACGGAGTTTGGAGGCAGTCATAG 742
| ||| || |||||||||||||||||| || ||||||||||||||||||| || |||| |
Sbjct 1034 AGTTGCGTAAACTGTTTTCGCCATCGACTGGATGGGAACGGAGTTTGGAGTCAATCATCG 1093
Query 743 ATATTCTTGAAAATGCTGAATCTAGTTATAAGAAATATCTGTTGCTAAGTGAAAGGAA-G 801
|||||||||| ||| | || |||| ||||||||||||||| ||| ||| ||||| ||| |
Sbjct 1094 ATATTCTTGAGAATTCGGAGTCTAATTATAAGAAATATCTCTTGTTAAATGAAA-GAAGG 1152
Query 802 GAGAATCAA-GAA-A--CTAAAAACATTCTGACAGCATTTGGAGAGTTTGTAATGAAAAT 857
||| || || ||| | |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1153 GAG-ATTAAGGAAGATGGTAAAAACATTCTTACAACATTTGGAGAGTTTGTAATGAAAAT 1211
Query 858 GTTTCTTGGCTCGAAAG-AA-A-C--A-CCGG-AGAAG--G--AAG-AAGAAATCATTCT 905
|||||||||||| |||| || | | | || ||||| | ||| |||||| |||||
Sbjct 1212 GTTTCTTGGCTCAAAAGAAAGATCGGAGAAGGAAGAAGCTGAAAAGAAAGAAAAGATTCT 1271
Query 906 TACATTTGGGGAGTTTGTAATGGAAAAATT--TGATGGGTTAAGTGAAACAATGAAGAAG 963
|||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||
Sbjct 1272 TACATTTGGGGAGTTTGTAA-AGAAAAATTACT-ATGGGTTAAGTGAAACAATGGGGAAG 1329
Query 964 ATCCAGAAGGATATGGTGGATTTGTATACACATCTGCCTAAGTCCTTT-CTATCGTCTAA 1022
||||||||||||||||||||||||| |||||||| || ||||| ||| | ||| |||||
Sbjct 1330 GTCCAGAAGGATATGGTGGATTTGTACACACATCTTCCCAAGTCTTTTAC-ATCATCTAA 1388
Query 1023 CGATGTGAAGAATATGATCGTAGCCCGTCAAGCTCTTCGCCAAGCCAGAACTTTCTTGCA 1082
|||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||
Sbjct 1389 CGATGTGAAGAATATGATCGCAGCCCGTAAAGCTCTTCGCCGAGCCAGATCTTTCTTGCA 1448
Query 1083 GGAGAAACAAGGAAGCTTCACATTTGATTGCTTCAACAAATTTGTCTGTGTTGATTGCCT 1142
|||||||||||||||||||||||| ||||||||||||||| | || || ||||||||||
Sbjct 1449 GGAGAAACAAGGAAGCTTCACATTCGATTGCTTCAACAAAGTCATCAGTATTGATTGCCT 1508
Query 1143 TCGGACTCTACGTTTGCTATCAAAACGTTTTGAGATTCCAGCCTTGTTGATGAAGGAGGA 1202
|| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 1509 TCAGACTCTACGTTTGCTATCAAAACGTTTTGAGATTCCAGCCTTGTTGGTAAACGAGGA 1568
Query 1203 TATAAGGACATTCTGCCTACAAAATGCACACATAATCTTTTGCACTGCCTCGGGTGCTGC 1262
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1569 TACAAGGACATTCTGCCTACAAAATGCACACATAATCTTCTGCACTGCCTCGGGTGCTGC 1628
Query 1263 AGAAATGACCGCGGAACGGGCAGGGTCCATAG-ACATGCTTGTAGTTGACGAGGCGGCTC 1321
||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||
Sbjct 1629 AGAAATGACCGCGGAACGGACAGGGTCCATAGAAC-TTCTTGTAGTTGACGAGGCGGCTC 1687
Query 1322 AACTTAAAGAATGTGAATCAGTTGCTGCATTGCAACTTCAGGGTTTGCACCATGCTGTTC 1381
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1688 AGCTTAAAGAATGTGAATCAGTTGCTGCATTGCAAATTCAGGGTTTGCACCATGCTGTTC 1747
Query 1382 TTATAGGAGATGAGCTTCAGCTACCAGCAATGGTGCAAAGCGAGGTATGTGAGAAGGCCA 1441
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1748 TAATAGGAGATGAGCTTCAGCTACCAGCAATGGTGCAAAGCGAGGTATGTGAGAAGGCCA 1807
Query 1442 AATTTGTGAGAAGCTTGTTTGAGAGATTGGATTCACTTGGCCATAAGAAACATTTGCTTA 1501
|||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1808 AATTTGGGAGAAGCTTGTTTGAGAGATTGGTTTTGCTTGGCCACAAGAAACATTTGCTTA 1867
Query 1502 ATGTTCAATACCGTATGCATCCCTCTATAAGTCTTTTCCCCAACATGGAGTTTTATGGTG 1561
|||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| ||
Sbjct 1868 ATGTTCAATATCGTATGCATACTTCTATAAGCCTTTTCCCCAACATGGAGTTTTATGATG 1927
Query 1562 GGAAGATCTCTGATGCTGAGATTGTTAAAGAAAGCACCTATCAAAAGAGGTTTCTTCAAG 1621
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1928 GTAAGATCTCTGATGCTGAGATTGTTAAAGAAAGCACCTATCAAAAGCGGTTTCTTCGAG 1987
Query 1622 GAAACATGTTTGGCTCTTTTTCGTTCATCAATGTAGGACTTGGGAAAGAAGAGTTTGGTG 1681
||||||||||||| ||||| || || ||||| || |||||||||||||||||||||||||
Sbjct 1988 GAAACATGTTTGGTTCTTTCTCCTTTATCAACGTGGGACTTGGGAAAGAAGAGTTTGGTG 2047
Query 1682 ATGGACATAGTCCTAAGAATATGGTTGAGATTGCAGTAGTTTCTGAGATCTTAACCAATC 1741
||||||| |||||||| || ||||||||| |||| || ||||||||||||||| ||||||
Sbjct 2048 ATGGACACAGTCCTAAAAACATGGTTGAGGTTGCTGTGGTTTCTGAGATCTTATCCAATC 2107
Query 1742 TTCTCAAAGTGTCAAGTGAGACAAAGACGAAGATGAGTGTTGGTGTTATTTCACCTTATA 1801
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2108 TTCTCAAAGTGTCCAGTGAGGCAAAGACGAAGATGAGTGTTGGTGTTATTTCACCTTATA 2167
Query 1802 AAGCTCAAGTTAGTGCAATCCAAGAGAGAATCGGAGATAAGTACACCTCCGTATCAGATA 1861
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2168 AAGCTCAAGTTAGAGCAATCCAAGAGAGGATCGGAGATAAGTACACCTCCGTATCAGATC 2227
Query 1862 ACCTTTTCACTTTGAATGTCCGGTCGGTGGATGGGTTTCAAGGAGGAGAAGAAGACATCA 1921
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2228 AGCTTTTCACTTTGAATGTTCGGTCCGTGGATGGGTTTCAAGGAGGAGAAGAAGATATCA 2287
Query 1922 TTATCATATCCACCGTTAGAAGCAACTGTAACGGAAACATAGGGTTCCTCTCTAACCGTC 1981
||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||||
Sbjct 2288 TTATCATATCCACCGTTAGAAACAACGGTAACGGACACATAGGGTTTCTCTCTAACCGTC 2347
Query 1982 AAAGAGCCAACGTTGCACTGACTCGTGCAAGGCACTGTTTATGGGTGATTGGGAACGAGA 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2348 AAAGAGCCAACGTTGCACTGACTCGTGCAAGGCACTGTTTATGGGTGATTGGGAACGAGA 2407
Query 2042 GAACTTTGTCGCTGAGTGGTTCGATT 2067
||||||||||||||||||||||||||
Sbjct 2408 GAACTTTGTCGCTGAGTGGTTCGATT 2433
> Ahg947346 jgi|Araly1|947346|scaffold_703575.1
Length=2500
Score = 763 bits (413), Expect = 0.0
Identities = 901/1132 (80%), Gaps = 51/1132 (5%)
Strand=Plus/Plus
Query 968 AGAAGGATATGGTGGATTTGTATACACATCTGCCTAAGTCCTTT-CTATCGTCTAACGAT 1026
|||| |||||||| ||||||| || ||||||||||||| |||| | |||||||| |||
Sbjct 1207 AGAAAGATATGGTTGATTTGTGCACCCATCTGCCTAAGT-CTTTGATCTCGTCTAATGAT 1265
Query 1027 GTGAAGAATATGATCGTAGCCCGTCAAGCTCTTCGCCAAGCCAGA-ACTTTCTTGCAGGA 1085
|||||||| ||||| | ||| || |||||||||| || | ||| | ||||||||| ||
Sbjct 1266 GTGAAGAAAATGATAGAAGCTCGCCAAGCTCTTCACCGTGTTAGATA-TTTCTTGCAAGA 1324
Query 1086 GAA----AC-AAGGAAGCTT-C-ACATTTGATTGCTTCAACAA-ATTTGTCTGTGTTGAT 1137
||| | | | | || | | | || | ||||| || | | || ||||||||
Sbjct 1325 GAATTCTTCTACGTTTGATTCCAAGAAGGGA-AGTTTCAA-AAGAATCATCAGTGTTGAT 1382
Query 1138 TGCCTTCGGA-CTCTACGTTTGCTATCAAAACGTTTTGAGATTCCAGCCTTG-TTG---A 1192
||| ||| | || || ||||| || | ||||| ||| || |||||| ||| ||| |
Sbjct 1383 TGCATTC-AAGCTTTAAGTTTGATACCGAAACGATTTAAGGTTCCAGAATTGTTTGAAAA 1441
Query 1193 TGAAGGAGGATATAAGGACATTCTGCCTACAAAATGCACACATAATCTTTTGCACTGCCT 1252
|||| || ||||| |||| |||||| |||||||| || | |||||||| || || ||||
Sbjct 1442 TGAA-GAAGATATTAGGAAATTCTGTCTACAAAACGCGGATATAATCTTCTGTACAGCCT 1500
Query 1253 CGGGTGCTGCAGAAATGACCGCG-GAACGGGCAGGGTCCATAGACA-TGCTTGTAGTTGA 1310
| |||||||||||||||| | | ||| || |||| |||| | | ||||| |||||
Sbjct 1501 CAGGTGCTGCAGAAATGAATG-GTGAAAGGACAGGAAATGTAGA-ATTTCTTGTGGTTGA 1558
Query 1311 CGAGGCGGCTCAACTTAAAGAATGTGAATCAGTTGCTGCATTGCAACTTCAGGGTTTGCA 1370
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1559 CGAGGCGGCTCAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAACTTCAGGGACTGCG 1618
Query 1371 CCATGCTGTTCTTA-TAGGAGATGAGCTTCAGCTACCAGCAATGGTGCA-AAGCGAGGTA 1428
||||||||||| | ||||||||||| ||||| |||| |||||||| || || ||| | |
Sbjct 1619 TCATGCTGTTCT-ACTAGGAGATGAGTTTCAGTTACCTGCAATGGTTCATAA-CGATGAA 1676
Query 1429 TGTGAGAAGGCCAAATTTGTGA-GAAGCTTGTTTGAGAGATTGGATT-CACTTGGCCATA 1486
|| || ||||| ||||| | || ||||||||||||||||||||| || ||||||| ||||
Sbjct 1677 TGCGAAAAGGCGAAATTCG-GAAGAAGCTTGTTTGAGAGATTGG-TTACACTTGGTCATA 1734
Query 1487 AG-AAACATTTGCTTAATGTTCAATACCGTATGCATCCCT-CTATAAGTCTTTTCCCCAA 1544
| ||||| |||||| |||||||||| || ||||| |||| | || | | |||||| ||
Sbjct 1735 -GCAAACACTTGCTTGATGTTCAATATCGAATGCA-CCCTTCGATTATTAGTTTCCCTAA 1792
Query 1545 CATGGAGTTTTATGGTGGGAAGA-TCTCTGATGCTGAGATTGTTAAAGAAAGCACCTATC 1603
| ||||| |||||||||| || || ||||||| | |||| ||||||||| || |
Sbjct 1793 TAAAGAGTTCTATGGTGGGA-GAATCAAAGATGCTGCTAATGTTCAAGAAAGCATTTA-C 1850
Query 1604 -AAAAGAGGTTTCTTCAAGGAAACATGTTTGGCTCTTTTTCGTTCATCAATGTAGGACTT 1662
||||| | | |||||||||||||||||||||||| || ||||| ||||||||||| | |
Sbjct 1851 GAAAAGCGATATCTTCAAGGAAACATGTTTGGCTCCTTCTCGTTTATCAATGTAGGTCAT 1910
Query 1663 GGGAAAGAAGAGTTTGGTGATGGACATAGTCCTAAGAATATGGTTGA-GATTGCAGT-AG 1720
|| |||||||||||||||||||| |||||||| ||||| |||||||| | |||| || |
Sbjct 1911 GGAAAAGAAGAGTTTGGTGATGGGCATAGTCCCAAGAACATGGTTGAAG-TTGCTGTGA- 1968
Query 1721 TTTCTGAGATCTTAACCAATCTTCTCAAAGTGTCAAGTGAGACAAAGACGAAGATGAGTG 1780
||||||| ||| || | |||||| ||||||| |||||||| | ||||| || |||||||
Sbjct 1969 TTTCTGAAATCCTATCAAATCTTTTCAAAGTTTCAAGTGAAAGAAAGATTAATATGAGTG 2028
Query 1781 TTGGTGTTATTTCACCTTATAAAGCTCAAGTTAGTGCAATCCAAGAGAGAATCGGAGATA 1840
|||| || ||| |||||||||||| ||||| || ||||||||||| |||||| |||||
Sbjct 2029 TTGGAGTGATTACACCTTATAAAGGACAAGTGAGAGCAATCCAAGACAGAATCATAGATA 2088
Query 1841 AGTACACCTCCGTATCAGATAACCTTTTCACTTTGAATGTCCGGTCGGTGGATGGGTTTC 1900
|||||| ||| |||||| | | |||||||| |||||||| |||||||| ||||||||||
Sbjct 2089 AGTACAGTTCCTTATCAGGTGAGCTTTTCACATTGAATGTTCGGTCGGTAGATGGGTTTC 2148
Query 1901 AAGGAGGAGAAGAAGACATCATTATCATATCCACCGTTAGAAGCAACTGTAAC-GGAAAC 1959
|||| || |||||||| | || ||||| |||||||||||||| ||||||||| ||||
Sbjct 2149 AAGGTGGTGAAGAAGATGTTATCATCATCTCCACCGTTAGAAGTAACTGTAACAGGAAGG 2208
Query 1960 ATAGGGTTCCTCTCTAACCGTCAAAGAGCCAACGTTGCACTGACTCGTGCAAGGCACTGT 2019
| || || ||| ||||||||||||||||||||| || || ||||| || || ||||||
Sbjct 2209 TT-GGATTTCTCAGTAACCGTCAAAGAGCCAACGTGGCGCTCACTCGAGCTAGACACTGT 2267
Query 2020 TTATGGGTGATTGGGAACGAGAGAACTTT-G-TCGCTGAGTGGTTCGATTTG 2069
|||||||||||||| || |||| ||| | | ||| ||||||||| |||||
Sbjct 2268 TTATGGGTGATTGGAAATGAGACAACACTAGCTCG--GAGTGGTTCAATTTG 2317
> Ahg891304 jgi|Araly1|891304|Al_scaffold_0007_3290
Length=2457
Score = 752 bits (407), Expect = 0.0
Identities = 798/985 (81%), Gaps = 34/985 (3%)
Strand=Plus/Plus
Query 1099 TTCACATTTGATTGCTTCAACAAATTTGTCTGTGTTGATTGCCTTCGGACTCTACGTTTG 1158
|||| |||||||||||| | ||| || ||| ||||||| ||| ||||||||||||
Sbjct 1330 TTCAAATTTGATTGCTT-TA-AAA-GAATCAGTGCTGATTGCGTTCAGACTCTACGTTTA 1386
Query 1159 CTAT-CAAAACGTTTTGAGATTCCAGCCTTGTT-GATGAAGGAGGATATAAGGACATTCT 1216
|| | | |||||||||||||| ||| |||||| || || | |||| || ||||| |
Sbjct 1387 CT-TCCGCAACGTTTTGAGATTTCAGACTTGTTGGA-AAACAAAGATACAAAAACATTTT 1444
Query 1217 GCCTACAAAATGCACACATAATCTTTTGCACTGCCTCGGGTGCTGCAGAAATG-A-CCGC 1274
| ||||| |||||| | |||||||| ||||| || || |||||||| || ||| | |||
Sbjct 1445 GTCTACAGAATGCAGATATAATCTTCTGCACAGCATCAGGTGCTGCGGATATGAATCCG- 1503
Query 1275 GGAACGGGCAGGGTCCATAGACATGCTTGTAGTTGACGAGGCGGCTCAACTTAAAGAATG 1334
| || || |||| || || ||| | ||||| ||||| ||||||||||| |||||||||||
Sbjct 1504 GTAA-GGACAGGATCGATCGACCTTCTTGTGGTTGATGAGGCGGCTCAGCTTAAAGAATG 1562
Query 1335 TGAATCAGTTGCTGCATTGCAAC-TTCAGGGTTTGCACCATGCTGTTCTTATAGGAGATG 1393
||||||||||||||| ||||||| ||| || || | ||||||||||||||||||||||
Sbjct 1563 TGAATCAGTTGCTGCTTTGCAACTTTCTGGACTT-CGTCATGCTGTTCTTATAGGAGATG 1621
Query 1394 AGCTTCAGCTACCAGCAATGGTGCAAAGCGAGGTATGTGAGAAGGCCAAATTTGTG-AGA 1452
|||||||| | || |||||| || || || ||||||| ||||| ||||| | | ||
Sbjct 1622 AGCTTCAGTTGCCTGCAATGATG--TGGC-AGATATGTGAAAAGGCAAAATTCG-GAAGC 1677
Query 1453 AGCTTGTTTGAGAGATTGGATTC-ACTTGGCCATAAGAAACATTTGCTTAATGTTCAATA 1511
|| ||||| ||||| |||| ||| ||||| || || || ||||||||||||||||||||
Sbjct 1678 AGTTTGTTCGAGAGGTTGG-TTCTGCTTGGTCACAACAAGCATTTGCTTAATGTTCAATA 1736
Query 1512 CCGTATGCATCCCTCTATAAGTCTTTTCCCCAACATGGAGTTTTATGGTGGGAAGATCTC 1571
||| |||||||| || || |||| |||||| || | ||||| ||||||||||| |||
Sbjct 1737 CCGAATGCATCCTTCGATTAGTCGTTTCCCTAATAAAGAGTTCTATGGTGGGAAAATCAA 1796
Query 1572 TGATGCTGAGATTGTTAAAGAAAGCACCTATCAAAAGAGGTTTCTTCAAGGAAACATGTT 1631
||||||| || |||| ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1797 AGATGCTGCGAATGTTCAAGAAAGCATTTATCAAAAGAGGTTTCTTCAAGGGAACATGTT 1856
Query 1632 TGGCTCTTTTTCGTTCATCAATGTAGGACTTGGGA-AAGAAGAGTTTGGTGATGGACATA 1690
||| ||||| || || |||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 1857 TGGTTCTTTCTCTTTTATCAATGTTGGACTT-GGAGAAGAAGAGTTTGGTGATGGACATA 1915
Query 1691 GTCCTAAGAATATGGTTGA-GATTGCAGT-AGTTTCTGAGATCTTAACCAATCTTCTCAA 1748
||||||| || |||||||| | |||| || | ||||||| ||| || | |||||| ||||
Sbjct 1916 GTCCTAAAAACATGGTTGAAG-TTGCTGTGA-TTTCTGAAATCATATCAAATCTTTTCAA 1973
Query 1749 AGTGTCAAGTGAGACAAAGACGAA-GATGAGTGTTGGTGTTATTTCACCTTATAAAGCTC 1807
||| |||||||| | || || || |||||| ||||| || |||| || || |||| |
Sbjct 1974 AGTTTCAAGTGAAAGAA-GAATAAAGATGAGCGTTGGAGTGGTTTCTCCATACAAAGGAC 2032
Query 1808 AAGTTAGTGCAATCCAAGAGAGAATCGGAGATAAGTACACCTCCGTATCAGATAACCTTT 1867
|||| || |||||||||||||||| | | ||||||||| ||| |||||| | | ||||
Sbjct 2033 AAGTCAGAGCAATCCAAGAGAGAACCAAAAATAAGTACAGCTCTTTATCAGGTGAGCTTT 2092
Query 1868 TCACTTTGAATGTCCGGTCGGTGGATGGGTTTCAAGGAGGAGAAGAAGACATCATTATCA 1927
||||||||||||| |||||||| |||||||||||||| || |||||||| | || ||||
Sbjct 2093 TCACTTTGAATGTTCGGTCGGTAGATGGGTTTCAAGGTGGGGAAGAAGATGTTATCATCA 2152
Query 1928 TATCCACCGTTAGAAGCAACTGTAACGGAAACA-TAGGG-TTCCTCT-CTAACCGTCAAA 1984
| || ||||||||||| ||| |||| ||||| | | ||| || ||| | ||||||||||
Sbjct 2153 TCTCTACCGTTAGAAGTAACGGTAATGGAAA-AGT-GGGATTTCTCAAC-AACCGTCAAA 2209
Query 1985 GAGCCAACGTTGCACTGACTCGTGCAAGGCACTGTTTATGGGTGATTGGGAACGAGAGAA 2044
||||||| || ||||| ||||| |||||||| |||||||||||| |||| || |||| ||
Sbjct 2210 GAGCCAATGTGGCACTTACTCGAGCAAGGCATTGTTTATGGGTGGTTGGTAATGAGACAA 2269
Query 2045 CTTTGTCGCTGAGTGGTTCGATTTG 2069
||||| | || ||||||||||||||
Sbjct 2270 CTTTGGCTCTAAGTGGTTCGATTTG 2294
> Ahg493692 jgi|Araly1|493692|fgenesh2_kg.7__3125__AT5G37160.1
Length=2604
Score = 691 bits (374), Expect = 0.0
Identities = 897/1141 (79%), Gaps = 69/1141 (6%)
Strand=Plus/Plus
Query 974 ATATGGTGGATTTGTATACACATCTGCCTAAGTCCTTTC-TATCGTCTAACGATGTGAAG 1032
||||||| ||||||| || ||||| ||||||| ||||| | || ||||| |||||||||
Sbjct 1325 ATATGGTTGATTTGTGCACTCATCTACCTAAGT-CTTTCATTTCATCTAAAGATGTGAAG 1383
Query 1033 AATATGATCGTAGCCCGTCAAGCTCTTCGCCAAGCCAGA-ACTTTCTTGCAGGAGAA--- 1088
|||||||| | |||||| ||||| |||| || | ||| | |||||||||||||||
Sbjct 1384 AATATGATAGCAGCCCGCCAAGCGCTTCACCGTGTTAGAGA-TTTCTTGCAGGAGAATTC 1442
Query 1089 A-CAAG-GAAG-CTTC---ACA------TTT-G-----ATTGCTTCAACAAATTTGTCTG 1130
| | || || | ||| | | ||| | ||||||| |||||| | || |
Sbjct 1443 ATCTAGAGATGATTTCAAGAAAGGTGGTTTTAGATTCAATTGCTTTAACAAACTCATCAG 1502
Query 1131 TGTTGATTGCCT-TCG-GACTCTACGTTTGCTAT-CAAAACGTTTTGAGATTCCAGCCTT 1187
|||||| || || | | | ||||| || | || | ||||| |||||| |||| | |||
Sbjct 1503 TGTTGA-TG-CTATTGAGGCTCTATGTCTACT-TCCAAAATGTTTTGGGATTTTTGGCTT 1559
Query 1188 -GTTGATGAAGGAGGATATAAGGACATTCTGCCTACAAAATGCACACATAATCTTTTGCA 1246
| || | || ||||| |||| ||| || |||||||||||| | |||||| | ||||
Sbjct 1560 AGAAAAT-TATGAAGATATCAGGAAATTTTGTCTACAAAATGCAGATATAATCCTCTGCA 1618
Query 1247 CTGCCTCGGGTGCT-G-CAGAAAT-GACCGCGGAACGGGCAGGGTCCATAGACATGCTTG 1303
| ||||| ||| | | || | || | | ||||| || ||| || | ||| | || |
Sbjct 1619 CAGCCTCAAGTG-TGGCCA-ATATGGTTC-CGGAAAGGATAGGCTCTGTCGACCTTCTCG 1675
Query 1304 TAGTTGACGAGGCGGCTCAACTTAAAGAATGTGAATCAGTTGCTGCATTGCAACTT-CAG 1362
| || || ||||| ||||| ||||||||||||||||||||| | |||||||||||| | |
Sbjct 1676 TGGTCGATGAGGCAGCTCAGCTTAAAGAATGTGAATCAGTTACCGCATTGCAACTTCCTG 1735
Query 1363 GGTTTGCACCATGCTG-TTCTTATAGGAGATGAGCT-TCAGCTACCAGCAATGGTGCAAA 1420
| || | ||||| | |||| |||||||||||| | |||| |||| |||||||| || |
Sbjct 1736 GACTT-CGTCATGC-GCTTCTAATAGGAGATGAG-TATCAGTTACCTGCAATGGTTCACA 1792
Query 1421 GCGAGGTATGTGAGAAGGCCAAATTTGTG-AGAAGCTTGTTTGAGAGATTGG-ATTCACT 1478
|| ||| ||| || ||||| ||||| | | ||||||||||| |||||||||| || | |
Sbjct 1793 GCAAGGAATGCGAAAAGGCGAAATTCG-GAAGAAGCTTGTTCGAGAGATTGGTTTTGA-T 1850
Query 1479 TGGCCATAAGAAACATTTGCTTAATGTTCAATACCGTATGCATCCCTCTATAAGTCT-TT 1537
||| ||||| ||||||||||| ||||||||||| || |||||||| || || ||| | ||
Sbjct 1851 TGGTCATAACAAACATTTGCTAAATGTTCAATATCGGATGCATCCTTCGATTAGT-TGTT 1909
Query 1538 TCCCCAACATGGAGTTTTATGGTGGGAAG-ATCTCTGATGC-TGAGATTGTTAAAGAAAG 1595
|||| || | ||||||||||| |||| || ||| ||||||| | ||||||| ||||| |
Sbjct 1910 TCCCTAATAAGGAGTTTTATGATGGG-AGAATCACTGATGCAT-CGATTGTTCAAGAACG 1967
Query 1596 CACCTATC-AAAAGAGGTTTCTTCAAGGAAACATGTTTGGCTCTTTTTCGTTCATCAATG 1654
|| || | ||||| |||||||||| ||||| |||||||| ||||| || || |||||||
Sbjct 1968 CATTTA-CGAAAAGCGGTTTCTTCAGGGAAAAATGTTTGGTTCTTTCTCTTTTATCAATG 2026
Query 1655 TAGGACTTGGGAAAGAAGAGTTTGGTGATGGACATAGTCCTAAGAATATGGTTG-AGATT 1713
| |||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 2027 TGGGACGTGGGAAAGAAGAGTTTTGTGATGGACATAGTCCTAAGAATATGGTTGAAG-TT 2085
Query 1714 GCAGT-AGTTTCTGAGATCTTAACCAATCTTCTCAAAGTGTCAAG--TGAGACAAAGACG 1770
|| || | |||| || ||| || |||||||| ||||||| ||||| | ||| || | |
Sbjct 2086 GCTGTCA-TTTCCGAAATCATATCCAATCTTTTCAAAGTTTCAAGTCTAAGA-AACCA-G 2142
Query 1771 AAGATGAGTGTTGGTGTTATTTCACCTTATAAAGCTCAAGTTAGTGCAATCCAAGAGAGA 1830
|||||||||||||| || ||||||||||| || | ||||| || || ||||||||||||
Sbjct 2143 AAGATGAGTGTTGGAGTGATTTCACCTTACAAGGGACAAGTGAGAGCTATCCAAGAGAGA 2202
Query 1831 ATCGGAGATAAGTACACCTCCGTATCAGATAACCTTTTCACTTTGAATGTCCGGTCGGTG 1890
|| || ||||||||| ||| |||||| | | ||||||||||||||||| | |||||
Sbjct 2203 ATTGGTGATAAGTACGGTTCCTTATCAGGTCAGCTTTTCACTTTGAATGTTCAATCGGTA 2262
Query 1891 GATGGGTTTCAAGGAGGAGAAGAAGACATCATTATCATATCCACCGTTAGAAGCAACTGT 1950
||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||| ||
Sbjct 2263 GATGGGTTTCAAGGAGGAGAAGAAGACATTATCATCATCTCTACCGTTAGAAGTAAC-GT 2321
Query 1951 -AACGGAAACATAGGG-TTCCTCTCTAACCGTCAAAGAGCCAACGTTGCACTGACTCGTG 2008
|| |||||| | ||| || || ||||| |||||||||||| || |||||||||||||
Sbjct 2322 TAATGGAAACGT-GGGATTTCTAAGTAACCATCAAAGAGCCAATGTGGCACTGACTCGTG 2380
Query 2009 CAAGGCACTGTTTATGGGTGATTGGGAACGAGAGAACTTTGTCGCTGAGTGGTTCGATTT 2068
|||| || ||||||||||||||||| ||||||| |||||| | || |||||||||||||
Sbjct 2381 CAAGACATTGTTTATGGGTGATTGGTAACGAGACCACTTTGGCTCTAAGTGGTTCGATTT 2440
Query 2069 G 2069
|
Sbjct 2441 G 2441
> Ahg355656 jgi|Araly1|355656|fgenesh1_pg.C_scaffold_7002829
Length=2487
Score = 667 bits (361), Expect = 0.0
Identities = 667/813 (82%), Gaps = 27/813 (3%)
Strand=Plus/Plus
Query 1087 AAACAAGGAAGCTTCACATTTGATTGCTTCAACAA-ATTTGTCTGTGTTGATTGCCTT-C 1144
||| |||||| |||| ||||||||||||||| || | | || |||||||||||||| |
Sbjct 1417 AAAGAAGGAAATTTCAAATTTGATTGCTTCAA-AAGACTCATCAGTGTTGATTGCCTTGC 1475
Query 1145 GGACTCTACGTTTGCTAT-CAAAACGTTTTGAGATTCCAGCCTTGTT-GATGAAGGAGGA 1202
|| |||||||||| || | |||||||||||||||| || | | |||| || || || ||
Sbjct 1476 GG-CTCTACGTTTACT-TCCAAAACGTTTTGAGATACCGGACATGTTGGA-AAACGAAGA 1532
Query 1203 TATAAGGACATTCTGCCTACAAAATGCACACATAATCTTTTGCACTGCCTCGGGTGCTGC 1262
||| |||| ||| ||||||||||| || || |||||| | ||||| || || ||||||||
Sbjct 1533 TATTAGGAAATTTTGCCTACAAAACGCGCATATAATCCTCTGCACGGCTTCTGGTGCTGC 1592
Query 1263 AGAAATG-ACCGCGGAACGGGCAGGGTCCATAG-ACATGCTTGTAGTTGACGAGGCGGCT 1320
|||||| | | ||||| || |||| |||| || | ||||| ||||| ||||| |||
Sbjct 1593 TGAAATGAATC-CGGAAAGGACAGGAAATATAGAAC-TTCTTGTGGTTGATGAGGCCGCT 1650
Query 1321 CAACTTAAAGAATGTGAATCAGTTGCTGCATTGCAACTTCAGGGTTTGCACCATGCTGTT 1380
|| ||||| |||||||||||||||||||||||||||||| |||| |||| || || ||
Sbjct 1651 CAGCTTAAGGAATGTGAATCAGTTGCTGCATTGCAACTTAAGGGACTGCATCACGCCATT 1710
Query 1381 CTT-ATAGGAGATGAGCTTCAGCTACCAGCAATGGTGCA-AAGCGAGGTATGTGAGAAGG 1438
|| |||||||||||| |||| | || |||||||| || || ||| | ||||| ||||
Sbjct 1711 -TTAATAGGAGATGAGTTTCAATTGCCTGCAATGGTACATAA-TGAGATGTGTGAAAAGG 1768
Query 1439 CCAAATTTGTG-AGAAGCTTGTTTGAGAGATTGGATTCACTTGGCCATAAGAAACATTTG 1497
| ||||| | | |||||||||||||| ||||||| || ||||| ||||| |||||||||
Sbjct 1769 CGAAATTCG-GAAGAAGCTTGTTTGAAAGATTGGTTTTGCTTGGTCATAACAAACATTTG 1827
Query 1498 CTTAATGTTCAATACCGTATGCATCCCTCTATAAGTCTTTTCCCCAACATGGAGTTTTAT 1557
||| |||||||||| || |||||||| || || |||| |||||| || | ||||| |||
Sbjct 1828 CTTGATGTTCAATATCGAATGCATCCTTCGATTAGTCGTTTCCCTAATAAAGAGTTCTAT 1887
Query 1558 GGTGGGAAG-ATCTCTGATGCTGAGATTGTTAAAGAAAGCACCTATCAAAAGAGGTTTCT 1616
|||||| || ||| ||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct 1888 GGTGGG-AGAATCAAAGATGCTGCGAATGTTCAAGAAAGCATCTATCAAAAGAGGTTTCT 1946
Query 1617 TCAAGGAAACATGTTTGGCTCTTTTTCGTTCATCAATGTAGGACTTGGGAAAGAAGAGTT 1676
|||||||||||||||||| || || || || |||||||| |||| ||| ||||| |||||
Sbjct 1947 TCAAGGAAACATGTTTGGTTCATTCTCCTTTATCAATGTTGGACGTGGAAAAGAGGAGTT 2006
Query 1677 TGGTGATGGACATAGTCCTAAGAATATGGTTGA-GATTGCAGT-AGTTTCTGAGATCTTA 1734
|||||||||||||||||| ||||| |||||||| | |||| || | ||||||| || ||
Sbjct 2007 TGGTGATGGACATAGTCCCAAGAACATGGTTGAAG-TTGCTGTCA-TTTCTGAAATAATA 2064
Query 1735 ACCAATCTTCTCAAAGTGTCAAGTGAGACAAAGACGAAGATGAGTGTTGGTGTTATTTCA 1794
|||||||| ||||||| |||||||| | || || ||||||||||||||| || |||||
Sbjct 2065 TCCAATCTTTTCAAAGTTTCAAGTGAAAGAAGGATGAAGATGAGTGTTGGAGTGGTTTCA 2124
Query 1795 CCTTATAAAGCTCAAGTTAGTGCAATCCAAGAGAGAATCGGAGATAAGTACACCTCCGTA 1854
|||||||||| ||||| || ||||||||||||||||||||||||||||||| ||| ||
Sbjct 2125 CCTTATAAAGGACAAGTGAGAGCAATCCAAGAGAGAATCGGAGATAAGTACAGTTCCTTA 2184
Query 1855 TCAGAT-AACCTTTTCAC-TTTGAATGTCCGGT 1885
|||| | ||| ||||||| ||||||||| ||||
Sbjct 2185 TCAGGTCAAC-TTTTCACGTTTGAATGTTCGGT 2216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5