BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G05630.1
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943179 jgi|Araly1|943179|scaffold_603723.1 542 8e-154
Ahg943178 jgi|Araly1|943178|scaffold_603722.1 316 5e-86
> Ahg943179 jgi|Araly1|943179|scaffold_603723.1
Length=415
Score = 542 bits (293), Expect = 8e-154
Identities = 348/375 (93%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATTTTCCAGATAAGCAGTATGACTCAAACAACCCATATAACATCATGATAACG 60
||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 21 ATGGCGATTTTTCCAGATAAGCCGTATGAGGCAAACAACCCACATAACATCATGATAACG 80
Query 61 TTGTCACCATTTGACGTCGATAGGAGTACTACGATAATGATGCCAAAAGCGTTACTAGAA 120
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 81 TTGTCACCATTTGACGTCGATATGAGTACTACGATCATGATGCCAAAAGCGTTACTAGAA 140
Query 121 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCCAGTTGTTACAAGTTCA-AGA 179
||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
Sbjct 141 ACCAATTTATTTCCTTTCATGGAGATAAGTACTCTCGTCGAACTGTTACAAGTTCCCA-A 199
Query 180 CAAGCCAAAGATGATTGGAGTGTATGATATTGATACTCAAATTACAACATATGTAATCAT 239
||||||||||||||||||| | ||||||||||||| | |||||||||||| ||| |||||
Sbjct 200 CAAGCCAAAGATGATTGGAATTTATGATATTGATAGTAAAATTACAACATTTGTTATCAT 259
Query 240 AAGACAAGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTAAAAAGAAAACA 299
|| | ||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 260 AAAAAAAGATGGAAATAATTTTAAATTTCATGGATGGAATGATATTCTCCTACGAAAACA 319
Query 300 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTAAATTT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 320 TTACAAAGCAGGCGATACTATTGCATTTTGGTGGGATCTTCGTCATACTAGACTTAATTT 379
Query 360 CAAACATGTTGCTTA 374
|||||| ||||||||
Sbjct 380 CAAACAGGTTGCTTA 394
> Ahg943178 jgi|Araly1|943178|scaffold_603722.1
Length=423
Score = 316 bits (171), Expect = 5e-86
Identities = 285/339 (84%), Gaps = 11/339 (3%)
Strand=Plus/Plus
Query 37 AACCCATATAACATCATGATAACGTTGTCACCATTTGACGTCGATAGGAGTACTACGATA 96
||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||| ||
Sbjct 74 AACCCATTTAACATCATGATAACGTTGTCACCATTTGACATAGATTTGAGTACTACGTTA 133
Query 97 ATGATGCCAAAAGCGTTACTAGAAACCAATTTATTTCCTTTCATGGAGATAAGTACTCTC 156
|| |||||||| ||||||||||| |||| |||||||||||| | || |||||| ||||
Sbjct 134 TTGGTGCCAAAAACGTTACTAGAAGCCAACTTATTTCCTTTCTTTGATATAAGTTTTCTC 193
Query 157 GTCCAGTTGTTACAAGTTCAAGACAAGCCAAAGATGATTGGAGTGTATGATATTGATACT 216
||| | ||||||||||||| | || | || ||| | | ||| | ||| |||||||||
Sbjct 194 GTCGAATTGTTACAAGTTC--GT-AA-C-AA-GAT--T-GAAGTTTTTGACATTGATACT 244
Query 217 CAAATTACAACATATGTAATCAT-AAGACAAGATGGAAATAATTTTAAATTTCATGGATG 275
|||||||||||| | | | ||| || | |||||||||||||||| ||||||| ||| ||
Sbjct 245 AAAATTACAACATTTCTTACCATGAA-AGAAGATGGAAATAATTTCAAATTTCGTGGGTG 303
Query 276 GAATGATATTCTAAAAAGAAAACATTACAAAGCAGGCGATACTATTGCATTTTGGTGGGA 335
|||| ||||||| || |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 304 GAATAATATTCTCGAACGAAAACATTACAGGGCAGGCGATACTCTTGCATTTTGGTGGGA 363
Query 336 TCTTCGTCATACTAGACTAAATTTCAAACATGTTGCTTA 374
||| | ||| |||||||| ||||||||||||||||||||
Sbjct 364 TCTCCATCACACTAGACTTAATTTCAAACATGTTGCTTA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13392611739
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5