BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G06477.1

Length=4320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952614 jgi|Araly1|952614|scaffold_96100001.1                      279    9e-74
  Ahg949205 jgi|Araly1|949205|scaffold_801092.1                        117    7e-25
  Ahg926782 jgi|Araly1|926782|scaffold_202343.1                        117    7e-25


> Ahg952614 jgi|Araly1|952614|scaffold_96100001.1
Length=354

 Score =  279 bits (151),  Expect = 9e-74
 Identities = 205/229 (90%), Gaps = 11/229 (5%)
 Strand=Plus/Plus

Query  3925  GGCTCTCTTTGGGCTTTCCGAAAAGGTATCACATGCCAAGTTTGGCCTCATGGTATAGAA  3984
             |||| |||||||||||||||||||||||||||||| | |||||||||||| ||| || ||
Sbjct  127   GGCTATCTTTGGGCTTTCCGAAAAGGTATCACATGTCGAGTTTGGCCTCACGGTTTAAAA  186

Query  3985  GTTATAGAG-T-C--A--T-A-AAGTTTTAAC-Caa-aaaaaaaaaaaaaaaaaGAGGGA  4034
             ||||| | | | |  |  | | ||||  | || ||| ||||||||||| |||||||||||
Sbjct  187   GTTATGGCGTTCCGAAGGTGATAAGTCAT-ACGCAACAAAAAAAAAAAGAAAAAGAGGGA  245

Query  4035  TGCAACACGAGGAGTTCCCGGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACGC  4094
             ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  246   TGCAACACGAGGACTTCCCGGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGC  305

Query  4095  TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  4143
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  306   TTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  354


 Score =  108 bits (58),  Expect = 4e-22
 Identities = 62/64 (97%), Gaps = 0/64 (0%)
 Strand=Plus/Plus

Query  4030  AGGGATGCAACACGAGGAGTTCCCGGGAGGTCACCCATCCTAGTACTACTCTCACCCAAG  4089
             |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  64    AGGGATGCAACACGAGGACTTCCCGGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG  123

Query  4090  CACG  4093
             ||||
Sbjct  124   CACG  127


 Score =  106 bits (57),  Expect = 2e-21
 Identities = 59/60 (98%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  4084  CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  4143
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  4     CCCAAGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  63


> Ahg949205 jgi|Araly1|949205|scaffold_801092.1
Length=396

 Score =  117 bits (63),  Expect = 7e-25
 Identities = 65/66 (98%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  4084  CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  4143
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  393   CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  334

Query  4144  GCATCC  4149
              |||||
Sbjct  333   CCATCC  328


> Ahg926782 jgi|Araly1|926782|scaffold_202343.1
Length=240

 Score =  117 bits (63),  Expect = 7e-25
 Identities = 65/66 (98%), Gaps = 0/66 (0%)
 Strand=Plus/Minus

Query  4084  CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC  4143
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  237   CCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTAGTATGATC  178

Query  4144  GCATCC  4149
             ||||||
Sbjct  177   GCATCC  172



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 163381160889


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5