BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06495.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1 196 2e-49
Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1 169 5e-41
Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1 143 3e-33
> Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1
Length=381
Score = 196 bits (106), Expect = 2e-49
Identities = 191/229 (83%), Gaps = 17/229 (7%)
Strand=Plus/Plus
Query 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753
||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | |
Sbjct 39 GGATAGACCGATCGTCGGACGGATCGGATCGGACAGACCGATCGTCGGACGGATCA-GAC 97
Query 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800
||| || | | || | | |||| || ||| | | || | ||||||||||||| |
Sbjct 98 AGACCGATCGTCGGA-CGGATCAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156
Query 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216
Query 861 GGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTTATTCACCAT 908
||||||||||| ||| ||| |||||||||||| || ||| ||||||||
Sbjct 217 GGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 264
Score = 76.8 bits (41), Expect = 3e-13
Identities = 48/51 (94%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 974 ATCGGTAAAACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1024
|||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 681 GACGAATCGAATCGGACAGACCGATCGTCGGACGGATC 718
|||| |||| ||||||||||||||||||||||||||||
Sbjct 56 GACGGATCGGATCGGACAGACCGATCGTCGGACGGATC 93
> Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1
Length=348
Score = 169 bits (91), Expect = 5e-41
Identities = 161/192 (84%), Gaps = 15/192 (8%)
Strand=Plus/Plus
Query 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753
||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | |
Sbjct 39 GGATAGACCGATCGTCGGACGGATCGGATCGGACAGACCGATCGTCGGACGGATCA-GAC 97
Query 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800
||| || | | || | | |||| || ||| | | || | ||||||||||||| |
Sbjct 98 AGACCGATCGTCGGA-CGGATCAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156
Query 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860
|||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216
Query 861 GGTAAAGGGAGA 872
||||||||||||
Sbjct 217 GGTAAAGGGAGA 228
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 681 GACGAATCGAATCGGACAGACCGATCGTCGGACGGATC 718
|||| |||| ||||||||||||||||||||||||||||
Sbjct 56 GACGGATCGGATCGGACAGACCGATCGTCGGACGGATC 93
> Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1
Length=459
Score = 143 bits (77), Expect = 3e-33
Identities = 105/118 (89%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 793 GTTCGA-GGAAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGC 851
|||||| |||| ||| |||||||||||| || |||| |||||||||||||||||||||||
Sbjct 226 GTTCGATGGAATCACGAGGATAAGTGCAACCAAACACACCCAAGGGTCGCCCATGGATGC 285
Query 852 AATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTTATTCACCAT 908
||||| |||||||||||||| ||||||| |||||||||||| || ||| ||||||||
Sbjct 286 AATCTCACCGGTAAAGGGAGTAAGCACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 342
Score = 135 bits (73), Expect = 5e-31
Identities = 101/114 (89%), Gaps = 3/114 (3%)
Strand=Plus/Plus
Query 974 ATCGGTAAAACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACGGTGGGAACC 1033
|||||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACGGTGAGAACC 403
Query 1034 CATAGACAAAACGGATGTTAAACCCGCGAG-AGAACCTAAGGCCGACGGAAGAA 1086
| ||||||||||||||| ||||||||| | |||| |||||||||||| |||
Sbjct 404 GGTGGACAAAACGGATGTTGGACCCGCGAGCA-AACCAAAGGCCGACGGACGAA 456
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 382 AAGCATCCATTCGCCCCCTATATAAGGGAGGACGCCCA 419
||||| |||||||||||||||||||||||||||| |||
Sbjct 64 AAGCAACCATTCGCCCCCTATATAAGGGAGGACGTCCA 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5