BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G06495.1 Length=1215 Score E Sequences producing significant alignments: (Bits) Value Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1 196 2e-49 Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1 169 5e-41 Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1 143 3e-33 > Ahg480940 jgi|Araly1|480940|fgenesh2_kg.3__3641__AT3G29600.1 Length=381 Score = 196 bits (106), Expect = 2e-49 Identities = 191/229 (83%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753 ||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | | Sbjct 39 GGATAGACCGATCGTCGGACGGATCGGATCGGACAGACCGATCGTCGGACGGATCA-GAC 97 Query 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800 ||| || | | || | | |||| || ||| | | || | ||||||||||||| | Sbjct 98 AGACCGATCGTCGGA-CGGATCAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156 Query 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860 |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| ||| Sbjct 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216 Query 861 GGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTTATTCACCAT 908 ||||||||||| ||| ||| |||||||||||| || ||| |||||||| Sbjct 217 GGTAAAGGGAGTAAGTACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 264 Score = 76.8 bits (41), Expect = 3e-13 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 974 ATCGGTAAAACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 1024 |||||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 267 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACG 316 Score = 60.2 bits (32), Expect = 3e-08 Identities = 36/38 (95%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 681 GACGAATCGAATCGGACAGACCGATCGTCGGACGGATC 718 |||| |||| |||||||||||||||||||||||||||| Sbjct 56 GACGGATCGGATCGGACAGACCGATCGTCGGACGGATC 93 > Ahg493768 jgi|Araly1|493768|fgenesh2_kg.7__3201__AT3G29600.1 Length=348 Score = 169 bits (91), Expect = 5e-41 Identities = 161/192 (84%), Gaps = 15/192 (8%) Strand=Plus/Plus Query 694 GGACAGACCGATCGTCGGACGGATCGGATGGGACAGGCCGATCGTCGGACGGAACAGGTC 753 ||| ||||||||||||||||||||||||| |||||| |||||||||||||||| || | | Sbjct 39 GGATAGACCGATCGTCGGACGGATCGGATCGGACAGACCGATCGTCGGACGGATCA-GAC 97 Query 754 GGACAGA-C--C-GATC-G-TCAG--AG-GGGAT-G-G-AT-CGAGAAAAGTGTTCGAGG 800 ||| || | | || | | |||| || ||| | | || | ||||||||||||| | Sbjct 98 AGACCGATCGTCGGA-CGGATCAGATAGACCGATCGCGTATAAGGGAAAAGTGTTCGAAG 156 Query 801 AAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGCAATCTTACC 860 |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| ||| Sbjct 157 AAGCACGAGGATAAGTGCAACCGAACACACCCAAGGGTCGCCCATGGATGCAATCTCACC 216 Query 861 GGTAAAGGGAGA 872 |||||||||||| Sbjct 217 GGTAAAGGGAGA 228 Score = 60.2 bits (32), Expect = 3e-08 Identities = 36/38 (95%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 681 GACGAATCGAATCGGACAGACCGATCGTCGGACGGATC 718 |||| |||| |||||||||||||||||||||||||||| Sbjct 56 GACGGATCGGATCGGACAGACCGATCGTCGGACGGATC 93 > Ahg481537 jgi|Araly1|481537|fgenesh2_kg.4__597__AT3G47240.1 Length=459 Score = 143 bits (77), Expect = 3e-33 Identities = 105/118 (89%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 793 GTTCGA-GGAAGCACAAGGATAAGTGCATCCGAACAAACCCAAGGGTCGCCCATGGATGC 851 |||||| |||| ||| |||||||||||| || |||| ||||||||||||||||||||||| Sbjct 226 GTTCGATGGAATCACGAGGATAAGTGCAACCAAACACACCCAAGGGTCGCCCATGGATGC 285 Query 852 AATCTTACCGGTAAAGGGAGAAAGCACCAAGAATGGGTAAG-GAACGTTATTCACCAT 908 ||||| |||||||||||||| ||||||| |||||||||||| || ||| |||||||| Sbjct 286 AATCTCACCGGTAAAGGGAGTAAGCACCGAGAATGGGTAAGTGA-CGTGGTTCACCAT 342 Score = 135 bits (73), Expect = 5e-31 Identities = 101/114 (89%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 974 ATCGGTAAAACCAAAGGGTGACTCGACGGATAACCAACGGGAAAGTCCACGGTGGGAACC 1033 |||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 345 ATCGGTAACACC-AATGGTGACTCGACGGATAACCAACGGGAAAGTCCACGGTGAGAACC 403 Query 1034 CATAGACAAAACGGATGTTAAACCCGCGAG-AGAACCTAAGGCCGACGGAAGAA 1086 | ||||||||||||||| ||||||||| | |||| |||||||||||| ||| Sbjct 404 GGTGGACAAAACGGATGTTGGACCCGCGAGCA-AACCAAAGGCCGACGGACGAA 456 Score = 60.2 bits (32), Expect = 3e-08 Identities = 36/38 (95%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 382 AAGCATCCATTCGCCCCCTATATAAGGGAGGACGCCCA 419 ||||| |||||||||||||||||||||||||||| ||| Sbjct 64 AAGCAACCATTCGCCCCCTATATAAGGGAGGACGTCCA 101 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45366271230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5