BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06534.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327036 jgi|Araly1|327036|fgenesh1_pm.C_scaffold_6002256 1229 0.0
> Ahg327036 jgi|Araly1|327036|fgenesh1_pm.C_scaffold_6002256
Length=1083
Score = 1229 bits (665), Expect = 0.0
Identities = 831/910 (91%), Gaps = 16/910 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCGTTGGGCCCATTTCACCGCAGGGA-TCGTCTCCGTTGTTGTGCTCTCTTCTCT 59
|||||||||||||||||||| || ||||||| || |||||||||| || |||||||||||
Sbjct 1 ATGCTTCGTTGGGCCCATTTAACGGCAGGGATTC-TCTCCGTTGTCGTCCTCTCTTCTCT 59
Query 60 CCTTGTAGTCTTCCTCCGTCGCTGGTGCTGTCTCCGCCG---AGAGATCACCACAACCCT 116
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 60 CCTCGTAGTCTTCCTCCGTCGCTGGTGCTGTCTCCGCCGATCAGAGATCACCACAA-CC- 117
Query 117 TAAAGCGGCCAGTCCCATTCGAAGCGATAGCTTCCAGGCTAGAATCTCAAAGCTCCACCA 176
|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 118 ----GCAGCCAGTCCCATTCGGAGCAATAGCTTCCAGGCTAGAATCTCAAAGCTCCACCA 173
Query 177 GACGAGCCTCATCCACCAGCTAGATACTTCCGACATCAAGCGTAGAGGAAATATCAAAAA 236
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 174 GACGAGCCTCATCCACCAGCTAGATACCTCCGACATCAAGCGCAGAGGAAATATTAAAAA 233
Query 237 CTATTCAATCTCCAGAACCGCCACTGCCGGAGGATTCCCATCGAAACCTGGCCTATTCAT 296
|||| |||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 234 CTATCCAATCTCCAGAAGCGCCACTACTGGAGGATTCCCGTCGAAACCTGGCCTATTCAT 293
Query 297 CTGGACAGACCATCCGGCTTTGGTGACCGAAGCGGTCGAAAATGGGTGGACAAGGTTCGG 356
|||||| || || |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 294 CTGGACGGATCACCCGGCTTTGGTGACCGAAGCAGTGGATAATGGGTGGACAAGGTTCGG 353
Query 357 ATTCGCTGTCCATGAACCGGCTCCATTGGTGAGCGGGGCCTCCCCGGGGTCAGTTCTTCT 416
||||||| |||||||||| ||||| ||||| | |||| |||| || ||||| ||||||||
Sbjct 354 ATTCGCTCTCCATGAACCTGCTCCTTTGGTCACCGGGACCTCACCAGGGTCGGTTCTTCT 413
Query 417 AGGGCTTTGCACCACGGCAGGAAGCGAAGATCCTGGTGTTGTAATCTCATGGGAAGTGTC 476
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 AGGGCTTTGCACGACGGCAGGAAGCGAAGATCCTGGTGTTGTAATAACATGGGAAGTGTC 473
Query 477 AAACGGCTCCGTGGAATTCACACAAACGATCAAATTTAATCAAGCGTTCAACGAGACGGT 536
||||||||| || || |||||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct 474 AAACGGCTCTGTTGATTTCACACAGACGATCAAGTTTAATCAATCGTTCAAGGAGACGGT 533
Query 537 CAACGCaaaaaaaCACTTGATGATTCTCCGAGCAGGTTTACCACTTCCCGGACCACAACT 596
|||||||| ||||| ||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 534 CAACGCAATAAAACCCTTGATGGTTCTCCGAGGAGCATTACCACTTCCCGGACCACAACT 593
Query 597 CATAAGTTCTGCTTTCCCACAAGAGGCTTACTTTGAAATAACAATCCTCGAAATCACCCA 656
| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 594 CGTAAGTTCTGCTTTCCCACAAGAGGCTTACTTTGAAATTACAATCCTTGAAATCACCCA 653
Query 657 ACACCAC-AGTGGTGAGGCTGGTGACGTAGGTTGTGACTTAGTGGAAGGTGAAAAAACTA 715
|| |||| | ||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 654 ACGCCACCAC-GGTGAGGGTGGTGACGTAAGTTGTGAATTAGTGGAAGGTGAAAAAACTA 712
Query 716 AGTTGTTCAAGAACCAAGGACTAAAACTTGTCAAAAGAAGTGAATGGGATGGAAAAAACG 775
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 713 AGTTGTTCAAGAGCCAAGGACTAAAACTTGTCCAAAGAAGAGAATGGGATGGAGAAAACG 772
Query 776 AAGAAGCCGTTTTGTCTCTAGGACTAGCGACTGGTGGTTCCTTCGGCGC-G--GGCGAGA 832
|||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
Sbjct 773 AAGAAGCCGTTTTGTCTCTAGGACTAGCGACTGGTGGTTCCTTCGGTGCCGCCGGCGAAA 832
Query 833 CACGACTACCAGGAAAATTCCCGGCTTCTATTGGGTTCCAATCGGACGGTGCCATCTATC 892
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 833 CACGACTACCAGGAAAATTCCCGGCTTCTATTGGGTTCCAATCGAACGGTGCTATCTATC 892
Query 893 TCGATGGTAC 902
||||||||||
Sbjct 893 TCGATGGTAC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5