BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G06536.1

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894861 jgi|Araly1|894861|Al_scaffold_0006_2857                    802    0.0  


> Ahg894861 jgi|Araly1|894861|Al_scaffold_0006_2857
Length=501

 Score =  802 bits (434),  Expect = 0.0
 Identities = 478/500 (96%), Gaps = 0/500 (0%)
 Strand=Plus/Plus

Query  10   ATGAAGCTGGTTTGTGAATCGGAGAAACATGAGTGGGCAAAGGAAAACAAAGTGGTTGGT  69
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGAAGCTGGTTTGTGAATCGGAGAAACATGAGTGGGCGAAGGAAAACAAAGTGGTTGGT  60

Query  70   TGTGGTTACGATCCGAGGAAGAAGAAGGTTTACTTCACAGTTAACTCACACCTGGTTCAT  129
            |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| 
Sbjct  61   TGTGGTTACGATCCCAGGAAGAAGAAGGTTTACTTCACAGTCAACTCACACTTGGTTCAC  120

Query  130  GTTATTAACTGTAAAGCAGACGAGTTCGGGACACCTCTATATCCCACTCTTGCTTCCAAC  189
            || ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct  121  GTCATTAACTGTAAAGCAGACGAGTTTGGGACACCTCTCTACCCCACCCTTGCTTCCAAC  180

Query  190  ACAGAGGCCAGAGTTCTTGTCAACTTGGGGCAATCTCCATTTTATTACAGCCCGGCAAAC  249
            |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  181  ACAGAGGCCACAGTTCTTGTCAACTTGGGGCAATCTCCATTTTATTACGGCCCGGCAAAC  240

Query  250  GGGCAGCGGACATCAAACCCATGTGCTGGTGCTGTAGCCGGGCTCGAGGACAGCAAAGAG  309
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  GGGCAGCGCACATCCAACCCATGTGCTGGTGCTGTAGCCGGGCTCGAGGACAGCAAAGAA  300

Query  310  CTCTTCTCCATTGGAAGAATAGATTCTCACTATTTAAGTAATTTTTTCATTAACCGAGGA  369
            ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct  301  CTCTTCTCCATTGGAAGAATAGATTCTCACTATTTGAGCAATTTTTTCATTAACAGAGGA  360

Query  370  AATAGTGACGAGATTGCAAGCGGGAGGGCCACCGTGGGAAATAGTCATAGACGTAAGCTT  429
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  361  AATAGTGACGAGATTGCAAGCGGGAGGACCACCGTGGGAAATAGTCATAGACGTAAGCTT  420

Query  430  GACTATGACGAAGAATCCGATGCTGATCTTTTTGAGATTGCGCTTGAACGGTCTGGAAAA  489
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  421  GACTATGACGAAGAATCAGATGCTGATCTTTTCGAGATTGCGCTTGAACGGTCTGGAAAA  480

Query  490  CTAAATCCGTCCAAGTTATA  509
            |||||||| |||||||||||
Sbjct  481  CTAAATCCATCCAAGTTATA  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18543616254


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5