BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G06553.1

Length=2721
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916126 jgi|Araly1|916126|Al_scaffold_0008_877                     191    3e-47


> Ahg916126 jgi|Araly1|916126|Al_scaffold_0008_877
Length=549

 Score =  191 bits (103),  Expect = 3e-47
 Identities = 139/157 (89%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  843  ATGGTACATACAATTGCAGTTTTAGGTGAATGGATGTTGAAGAACGGATGACTTTTTACA  902
            |||||||| || ||||| ||||| ||||| |||||| | ||||||| ||| |  ||||||
Sbjct  1    ATGGTACACACGATTGCTGTTTTTGGTGATTGGATGCTAAAGAACGTATGGCACTTTACA  60

Query  903  GTTGATCAAACCAAAGGCTGCAAATTACTAGTTCTAGTGGATGATATGTCATATGTTGGA  962
             |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct  61   ATTGATCAAACCAAAGGCTCCAAATTACTTGTTCTAGTGGATGATATGTCATATGCTGGA  120

Query  963  CTACTTCAGATAGTTGAAGAAGAATTCCAATTATATA  999
            ||||||||||||||||||||||||| ||| ||| |||
Sbjct  121  CTACTTCAGATAGTTGAAGAAGAATACCAGTTAGATA  157



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 102653210275


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5