BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06598.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327037 jgi|Araly1|327037|fgenesh1_pm.C_scaffold_6002257 1037 0.0
Ahg489685 jgi|Araly1|489685|fgenesh2_kg.6__2819__AT4G06599.1 60.2 5e-08
> Ahg327037 jgi|Araly1|327037|fgenesh1_pm.C_scaffold_6002257
Length=804
Score = 1037 bits (561), Expect = 0.0
Identities = 666/718 (93%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 133 ATGGCAAGTTCAAAGGGGTCTCAGAATCATAGAAATCTGGGATGCAATGGGAAACAAGCT 192
||||||||||| |||||||||||||||| ||||||||||||||||| |||||| || |||
Sbjct 1 ATGGCAAGTTCCAAGGGGTCTCAGAATCTTAGAAATCTGGGATGCACTGGGAAGCAGGCT 60
Query 193 TTACTGCCTCCGAAAAGTCCGTTTACGGGTGGTCCAACGTTTAGTGCAGATTTTGTTCCA 252
||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 TTACTTCCTCCAAAAAGTCCGTTTACGGGTGGTCCAACGTTTTGTTCAGATTTTGTTCCA 120
Query 253 AGTAGTGTGATTGGATCCAAGGCTGTTCAGAAGCTTGGAGAAGGAAATGCCAATCATCAT 312
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 AGTAGTGTGATTGGATCCAAGGCTGTTCAGAAGCTTGGAGAAGGAAATGTCAATCATCAT 180
Query 313 CGAACTTCATCTGAGAGTTTTCTTATTGAGGAACAGCCTTCTTGGCTTGACGATCTTCTC 372
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 CGAACTTCATCTGAGAGTTTTCTGATTGAGGAACAGCCTTCTTGGCTTGACGACCTTCTC 240
Query 373 AACGAACCTGAAACACCTGTACGGAAAGGAGGGCATCGACGGTCATCGAGTGATTCATTT 432
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 241 AACGAACCCGAGACACCTGTACGGAAAGGAGGTCATCGACGGTCATCAAGTGATTCATTT 300
Query 433 GCATATGTAGATGTTCCTGTTGGTTTTGATGTTGATTACACGCTTTGGGATGGTGGTAGA 492
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 301 GCATATGTAGATGTCCCTGTTGGTTTTGATGTGGATTACACACTTTGGGATGGTGGTAGA 360
Query 493 TATAATAACAATAATGGTTTCTCTAATCACGTTAGAGGTCCCAAGGAGTCTGATTACCTT 552
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 361 TATAATAACAATAGCAGTTTCTCTGCTCACGCCAGAGGTCCCAAGGAGTCTGATTACCTT 420
Query 553 AGAAGCCAGCCTGTTCCTTTCTACCCTTCAGCTCATTTGTCCAAACAGAAAATAAGACCG 612
||||||||||| || || ||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 421 AGAAGCCAGCCCGTCCCCTTCTACCCTTCAGCTCATTTGCCCAAACAGAAAATGAGAACA 480
Query 613 TGGGATTCATTACCAGATTCCGGTGCTCGCCCGAACAGTAGTTCTGGTTGTTTGGAGAGT 672
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 TGGGATTCATTATCAGATTCCGGTGCTCGCCCAAACAGTAGTTCTGGTTGTTTGGAGAGC 540
Query 673 AGCTCTATCACAAGATCAGGGTCTTCTGGTAGCCTACGTGATACAGAAAAGGCTTATTCT 732
||| ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||| |
Sbjct 541 AGCCCTATCACAAGATCAGGGTCATCTGGTAGCCTACATGATGCAGAGAAGGCTTATTGT 600
Query 733 GCTGCTGATAGCAAGAAAGATTTCATAAATAATTTCGCAAAGTCGTCATTC-GAAAAACG 791
|||||||| ||||||||||||||||||| |||||| |||||||||| ||| |||||| |
Sbjct 601 GCTGCTGACGGCAAGAAAGATTTCATAAACAATTTCTCAAAGTCGTC-TTCCGAAAAAAG 659
Query 792 GGATAATCCTCTGGCTAAGTCTGCTACTTCCGAGGCTGATACGAAACGTGCTAGACAG 849
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 660 GGATAATTCTCTGGCTAAGTCTGTTACCTCCGAGGCTGATACGAAACGTGCTAGACAG 717
> Ahg489685 jgi|Araly1|489685|fgenesh2_kg.6__2819__AT4G06599.1
Length=1164
Score = 60.2 bits (32), Expect = 5e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1619 TTAACGTTTGAAACTACTAATAAAATGTTGACCGTTCT 1656
||||| || |||||||||||||||||||||||||||||
Sbjct 1164 TTAACATTCGAAACTACTAATAAAATGTTGACCGTTCT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5