BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06599.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489685 jgi|Araly1|489685|fgenesh2_kg.6__2819__AT4G06599.1 1783 0.0
> Ahg489685 jgi|Araly1|489685|fgenesh2_kg.6__2819__AT4G06599.1
Length=1164
Score = 1783 bits (965), Expect = 0.0
Identities = 1101/1167 (94%), Gaps = 8/1167 (1%)
Strand=Plus/Plus
Query 51 AAATGGCTTCCTCTTCCTCTTCTCCGACGCCTAGTGCTGCGGCGGCGGTCTCTCCTCTTA 110
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 AAATGGCTTCCTCTTCCTCTTCTCCGACGCCTAGTGCTACGGCGGCGCTCTCTCCTCTTA 60
Query 111 CGGAGGAAGAATTAACTCTAACAGTTAAGTGGAATGGAAAAGAGTACACCGTCCGTATCT 170
||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 61 CGGAGGAGGAACTAACTCTGACAGTTAAATGGAATGGAAAAGAGTACACCGTACGAATCT 120
Query 171 GTGCCGATGACTCAGTCGCCGAGCTAAAACGTCGCATCTGCCTTCTCACCACCGTTTTAC 230
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 GTGCCGACGACTCAGTCGCCGAGTTAAAACGTCGCATCTGCCTTCTCACCACCGTCTTAC 180
Query 231 CTAAACGCCAAAAGCTTCTTTATCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTT 290
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAACGCCAAAAGCTTCTTTACCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTT 240
Query 291 TACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGTACTGTTGAAG 350
|||||||||||||| |||||||||| || || ||||||||||||||||||||| ||||||
Sbjct 241 TACTCTCTTCGATCCCCTTTAAGCCATCGCTGAAGATGACAATGATCGGTACTATTGAAG 300
Query 351 ATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGTTGATGATTTTGAGCTTGGTA 410
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGATATAATAGTGGATCAAGCTGAATCTCCTGAAATTGTTGATGATTTTGAGCTTGGTA 360
Query 411 AGGAAGAAGCTGTTGATGTTAAAGATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAA 470
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 AGGAAGAAGCTGTGGATATTAAAGATAAAGAAGTCAATAAACAGAAGTTGAGAAGAAGAA 420
Query 471 TTGATCAATACAAGATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTT 530
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 TTGATCAATACAAGATAAATCTTCGATCGCCATGTCGTAAAGGCAAGAAACTTCTTGTTT 480
Query 531 TAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGCAGCTTA 590
||||||| ||||||||||||||||| || || ||||||||||||||||| || |||||||
Sbjct 481 TAGATATTGACTATACATTGTTCGACCACCGTTCCACCGCGGAGAATCCCTTACAGCTTA 540
Query 591 TGCGTCCTTATCTCCATGAGTTTCTTACTGCTGCTTATGCGGAATATGATATCATGATTT 650
||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 541 TGCGTCCTTATCTTCATGAGTTTCTTACTGCTGCGTATGCGGAATACGATATCATGATAT 600
Query 651 GGTCTGCTACCAGTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACA 710
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 601 GGTCTGCTACCAGTATGAAGTGGGTTGAGTTGAAGATGACTGAGCTGGGAGTGCTGAACA 660
Query 711 ATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTCCAGTCAG 770
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCCTAACTACAAGATCACAGCTCTTCTCGACCATCTTGCAATGATCACGGTCCAGTCAG 720
Query 771 ACACTCGCGGGATTTTTGATTGCAAACCGCTAGGCTTAATTTGGGCACTACTTCCTGAGT 830
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ACACTCGTGGGATTTTTGATTGCAAACCACTAGGCTTAATTTGGGCACTACTTCCTGAGT 780
Query 831 TCTATAACCCTGGTAACACGATAATGTTTGATGACCTAAGGAGGAATTTCGTAATGAATC 890
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTATAATCCTGGGAACACGATAATGTTTGATGACCTAAGGAGGAATTTCGTAATGAATC 840
Query 891 CTCAAAACGGTCTAACAATCAAGCCGTTTAGGAAAGCTCATGCAAATCGTGATACAGATC 950
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTCAAAACGGTCTAACAATCAGGCCGTTTAGGAAAGCTCATGCAAATCGTGATACAGATC 900
Query 951 AAGAGCTTGTGAAGCTGACTCAGTACCTTCTGACAATAGCTGAGCTT-AGTGATTTGAGT 1009
|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 901 AAGAGCTTGTGAAGCTGACTCAGTACCTTCTGACAATAGCAGAGCTACA-TGATTTGAGT 959
Query 1010 TCTCTACACCATAGCAGATGGGAATCATTCTCACAGGACAACGTCAAAAGGCGCAGACAG 1069
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 TCTCTACACCATAGCAGATGGGAATCATTCTCCCAGGACAACGTCAAAAGGCGCAGACAG 1019
Query 1070 GAATGACTCGGCCGCATCCATATTA-TCGGGTTTTTGTTTAGTTTTCTTGAAATACCAAG 1128
|||||||| ||||||||| |||||| |||| |||||||||||||||| ||| ||||||||
Sbjct 1020 GAATGACTTGGCCGCATCAATATTACTCGG-TTTTTGTTTAGTTTTCATGACATACCAAG 1078
Query 1129 AGATTCAGTTATCACTTTTTG-T--CCTTTACATATTTTATGAGTTGGAAGAACGGTCAA 1185
|| ||||| | |||||||||| | |||| | |||||||||| ||||| |||||||||||
Sbjct 1079 AGGTTCAGATGTCACTTTTTGCTTGCCTT-ATATATTTTATGGGTTGGTAGAACGGTCAA 1137
Query 1186 CATTTTATTAGTAGTTTCAAACGTTAA 1212
|||||||||||||||||| || |||||
Sbjct 1138 CATTTTATTAGTAGTTTCGAATGTTAA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5