BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06613.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902651 jgi|Araly1|902651|Al_scaffold_0004_3301 379 4e-104
Ahg358506 jgi|Araly1|358506|fgenesh1_pg.C_scaffold_8002293 374 2e-102
Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 350 3e-95
> Ahg902651 jgi|Araly1|902651|Al_scaffold_0004_3301
Length=423
Score = 379 bits (205), Expect = 4e-104
Identities = 316/368 (86%), Gaps = 13/368 (4%)
Strand=Plus/Plus
Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77
|||||||||||||| |||| ||||||| ||||||||||| |||| | |||||||||||||
Sbjct 16 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 74
Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137
||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || ||||
Sbjct 75 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 134
Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196
||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 135 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 193
Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253
|| ||||||| || |||||||| ||| | || | || ||| |||||| ||||||
Sbjct 194 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 250
Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313
| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 251 CAGTCAAAACTGGAACAAGTGCTATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 310
Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGTAATGACAG 373
||||||| ||| |||||| |||||| | ||||||| ||||||||||||||||||||||
Sbjct 311 TGTATGA-GAG--TGATAATCAGAAAGTGTTAGCTGGAGATAGCAGTGGTGTAATGACAG 367
Query 374 CAATCAAG 381
||||||||
Sbjct 368 CAATCAAG 375
> Ahg358506 jgi|Araly1|358506|fgenesh1_pg.C_scaffold_8002293
Length=492
Score = 374 bits (202), Expect = 2e-102
Identities = 323/380 (85%), Gaps = 13/380 (3%)
Strand=Plus/Plus
Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77
|||||||||||||| |||| ||||||| ||||||||||| |||| | |||||||||||||
Sbjct 16 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 74
Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137
||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || ||||
Sbjct 75 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 134
Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196
||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 135 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 193
Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253
|| ||||||| || |||||||| ||| | || | || ||| |||||| ||||||
Sbjct 194 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 250
Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313
| || |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 251 CAGTCAAAACTGGAACAAGTGCTATGACCAAGCACATCAAAAGGTGCAAGTTATTCAAGA 310
Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGTAATGACAG 373
||||||| ||| ||||| |||||| | ||||||| |||||||| |||||| ||||||
Sbjct 311 TGTATGA-GAG--TGATAGTCAGAAAGTGTTAGCTGGAGATAGCAGAGGTGTATTGACAG 367
Query 374 CAATCAAGTATAATAAATGG 393
||||||||||| ||||||||
Sbjct 368 CAATCAAGTATGATAAATGG 387
> Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023
Length=1266
Score = 350 bits (189), Expect = 3e-95
Identities = 300/352 (85%), Gaps = 13/352 (4%)
Strand=Plus/Plus
Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77
|||||||||||||| |||| ||||||| ||||||||||| |||| | |||||||||||||
Sbjct 172 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 230
Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137
||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || ||||
Sbjct 231 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 290
Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196
||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||
Sbjct 291 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 349
Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253
|| ||||||| || |||||||| ||| | || | || ||| |||||| ||||||
Sbjct 350 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 406
Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313
| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 CAGTCAAAACTGGAACAAGTGCTATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 466
Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGT 365
||||||| ||| |||||| |||||| | ||||||| ||||||||||||||
Sbjct 467 TGTATGA-GAG--TGATAATCAGAAAGTGTTAGCTGGAGATAGCAGTGGTGT 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5