BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G06613.1 Length=1896 Score E Sequences producing significant alignments: (Bits) Value Ahg902651 jgi|Araly1|902651|Al_scaffold_0004_3301 379 4e-104 Ahg358506 jgi|Araly1|358506|fgenesh1_pg.C_scaffold_8002293 374 2e-102 Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 350 3e-95 > Ahg902651 jgi|Araly1|902651|Al_scaffold_0004_3301 Length=423 Score = 379 bits (205), Expect = 4e-104 Identities = 316/368 (86%), Gaps = 13/368 (4%) Strand=Plus/Plus Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77 |||||||||||||| |||| ||||||| ||||||||||| |||| | ||||||||||||| Sbjct 16 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 74 Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137 ||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || |||| Sbjct 75 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 134 Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196 ||||| |||||||||||||||||||||||| ||||||||||||||| | ||| ||| Sbjct 135 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 193 Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253 || ||||||| || |||||||| ||| | || | || ||| |||||| |||||| Sbjct 194 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 250 Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313 | || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 251 CAGTCAAAACTGGAACAAGTGCTATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 310 Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGTAATGACAG 373 ||||||| ||| |||||| |||||| | ||||||| |||||||||||||||||||||| Sbjct 311 TGTATGA-GAG--TGATAATCAGAAAGTGTTAGCTGGAGATAGCAGTGGTGTAATGACAG 367 Query 374 CAATCAAG 381 |||||||| Sbjct 368 CAATCAAG 375 > Ahg358506 jgi|Araly1|358506|fgenesh1_pg.C_scaffold_8002293 Length=492 Score = 374 bits (202), Expect = 2e-102 Identities = 323/380 (85%), Gaps = 13/380 (3%) Strand=Plus/Plus Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77 |||||||||||||| |||| ||||||| ||||||||||| |||| | ||||||||||||| Sbjct 16 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 74 Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137 ||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || |||| Sbjct 75 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 134 Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196 ||||| |||||||||||||||||||||||| ||||||||||||||| | ||| ||| Sbjct 135 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 193 Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253 || ||||||| || |||||||| ||| | || | || ||| |||||| |||||| Sbjct 194 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 250 Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313 | || |||| ||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 251 CAGTCAAAACTGGAACAAGTGCTATGACCAAGCACATCAAAAGGTGCAAGTTATTCAAGA 310 Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGTAATGACAG 373 ||||||| ||| ||||| |||||| | ||||||| |||||||| |||||| |||||| Sbjct 311 TGTATGA-GAG--TGATAGTCAGAAAGTGTTAGCTGGAGATAGCAGAGGTGTATTGACAG 367 Query 374 CAATCAAGTATAATAAATGG 393 ||||||||||| |||||||| Sbjct 368 CAATCAAGTATGATAAATGG 387 > Ahg342260 jgi|Araly1|342260|fgenesh1_pg.C_scaffold_3002023 Length=1266 Score = 350 bits (189), Expect = 3e-95 Identities = 300/352 (85%), Gaps = 13/352 (4%) Strand=Plus/Plus Query 19 GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC 77 |||||||||||||| |||| ||||||| ||||||||||| |||| | ||||||||||||| Sbjct 172 GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC 230 Query 78 TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT 137 ||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || |||| Sbjct 231 TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT 290 Query 138 CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC 196 ||||| |||||||||||||||||||||||| ||||||||||||||| | ||| ||| Sbjct 291 CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG- 349 Query 197 CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT 253 || ||||||| || |||||||| ||| | || | || ||| |||||| |||||| Sbjct 350 -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA 406 Query 254 CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 313 | || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 407 CAGTCAAAACTGGAACAAGTGCTATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA 466 Query 314 TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGT 365 ||||||| ||| |||||| |||||| | ||||||| |||||||||||||| Sbjct 467 TGTATGA-GAG--TGATAATCAGAAAGTGTTAGCTGGAGATAGCAGTGGTGT 515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71228758150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5