BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06634.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489687 jgi|Araly1|489687|fgenesh2_kg.6__2821__AT4G06634.1 2076 0.0
> Ahg489687 jgi|Araly1|489687|fgenesh2_kg.6__2821__AT4G06634.1
Length=1465
Score = 2076 bits (1124), Expect = 0.0
Identities = 1270/1341 (95%), Gaps = 8/1341 (1%)
Strand=Plus/Plus
Query 1 AACCGGGACTCCATTATCAAAGTAT-TGCTTAAGGTCTCTCTTCTCTATCGTTCTTTTCC 59
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1 AACCGGGACTCCATTATCAAAGTATGTGCTTAAGGTCTCTCTTCTCTATCGTTC-TTTCC 59
Query 60 CCAGAACCCTAATCTCCCCCAAATCCTG-ATTCAATCGTACTCAAAACTCACAAAGGAAC 118
| ||||||||||||| |||||||||||| || | ||||| ||||||| ||||||||||||
Sbjct 60 CAAGAACCCTAATCTTCCCCAAATCCTGAATAC-ATCGTTCTCAAAATTCACAAAGGAAC 118
Query 119 CACCTTTACCCAAATAAATCAATGGATCATCAAAATTATCAATACCAAAATCCTTTCGAG 178
|||||||| | ||| ||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct 119 CACCTTTATCGAAAGAAATCGATGGATCATCACAACTATCAATATCAAAATCCTTTCGAG 178
Query 179 AGACGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGGGTACCA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGACGACCCATCCTTAAATCCAAAGCTCCTGCTGTGAAGTGGATCAAAGAATGGGTACCA 238
Query 239 CAAGATATTGTTGCTACAGGTGGAAAGTGTCATCTACACAAATGGGTCACAGAGGATACT 298
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 239 CAAGATATTGTTGCTACAGGTGGCAAGTGTTATCTACACAAATGGGTCACAGAGGATACT 298
Query 299 TTTAGCAGACTTAAAGAAAAAGAGAAAGAGCCTGATGTTCCTGAGCCTGAACCTGAACCA 358
|||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 299 TTTAACAGACATAAAGAAAAAGAGAAAGAGCCTGATGTTCCAGAGCCTGAGCCTGAACCA 358
Query 359 ACTACAGAGATTTTGTTTCTCTGTAGTTATGATGGTTGCGGGAAGACTTTCTTTGATGTT 418
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 359 ACTACAGAGATTTTGTTTCTCTGTAGTTATGATGGATGTGGGAAGACTTTCTTTGATGTT 418
Query 419 AGTGCATTGAGGAAACATTCTCATATCCATGGAGAAAGACAATATGTTTGTGATCAGGAA 478
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 419 AGTGCATTGAGAAAACATTCTCATATTCATGGAGAAAGACAATATGTTTGCGATCAGGAA 478
Query 479 GGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAGAGACATTATCTTATTCATACT 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 GGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAGAGACATCATCTTATTCATACT 538
Query 539 GGAGAGAGAAATTATATATGTACTTATGAAGGATGTGGAAAGGCATTCTCGTTGGATTTT 598
|||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 GGAGTGAGAAATTATGTATGTACTTATGAAGGATGTGGAAAGGCATTCTCCTTGGATTTT 598
Query 599 AACCTTAGGTCTCACATGAAGACTCATTCACAAGAGAATTATCATATATGTCCTTACAGT 658
|| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 599 AATCTCAGGTCTCACATGAAGACTCATTCACAAGAGAATTATCATATATGCCCATACAGT 658
Query 659 GGGTGTGTGAA-GAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCA 717
|| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 GGATGTG-GAAAGAGATATGCTCATGAATACAAGCTGAAGAACCACGTTGCTGCCTACCA 717
Query 718 TGAAAAGAATGGTGGTGGAGAGACTCCCAAATATACACCACCAGCAGAGAAAGTATTAAG 777
|||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||| |||
Sbjct 718 TGAAAAGAATGGTGCTGGAGAGACGCCCAAATATACTCCACCTGCAGAGAAAGTATCAAG 777
Query 778 GACTGTCAAAACACCTGCAACAGTTTGTGGCCCGTCTTCGGATCGGCCATACGCATGCCC 837
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 778 GACTGTCAAAACACCTGCAGCAGTTTATGGCCCGTCTTCGGATCGACCATACGCATGCCC 837
Query 838 TTACGAAGGGTGTGAGAAAGCTTACATACATGAGTACAAGCTTAAGCTCCACTTGAAGAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTACGAAGGGTGTGAGAAAGCTTACATACATGAGTACAAGCTTAAGCTCCACTTGAAGAG 897
Query 898 AGAACATCCAGGGCATTTACAAGAAGAGAACGCGGATACCCCCACACTGAACAAGCACAA 957
|||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 898 AGAACATCCAGGGCATTTACCGGAAGAGATCACGGATACCCTCACACTGAACAAGCACAA 957
Query 958 TGGCAATGACAGGAATGA-GATAGATGACGGGAGTGACCAAGATGTTTACAGGAAACACG 1016
|||| |||||||||||| | | ||||||||||||||||||||| ||||||||||||| |
Sbjct 958 CGGCAGTGACAGGAATGATG-TGGATGACGGGAGTGACCAAGATCTTTACAGGAAACATG 1016
Query 1017 CTAGTAATGGGAAAGGCCAGACACATAAACAACAGAGCAGAGCTAAGCCAAACATGAGGA 1076
||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1017 CTAGTAACGGGAAAAGCCAGACACATAAACAACAGACCAGAGCTAAGCCAAACATGAGGA 1076
Query 1077 CACCACCAGCCAAAGTTGGAAAGAAAGGTTCTACCTCTTCGCCTGCCAAAGCAAGGATTG 1136
||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1077 CACCACCAGCCAAAGCTGGAAAGAAAGGTTCAACCTCTTCGCCTGCCAAAGTGAGGATTG 1136
Query 1137 CaaaaaaaCCATGGCAAGCAAAAGAAACTTTTgaagaagtagaaagagaagaagaagaag 1196
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CCAAAAAACCATGGCAAGCAAAAGAAACTTTTGAAGAAGTAGAAAGAGAAGAAGAAGAAG 1196
Query 1197 atagcgaggagacagaggaagatagagaTAATGTGGAGGATGGCTGGAGGTTTGGCGAAA 1256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 ATAGCGAGGAGACAGAGGAAGATAGAGATAATGTGGATGATGGCTGGAGGTTTGGCGAAA 1256
Query 1257 ACAACGAGGATGATGACGACGATGAAGAGACCGAGTATGAAGATTAGTTTGAGCTTCGTC 1316
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1257 ACAACGAGGAGGATGATGACGATGAAGAGACCGAGTATGAAGACTAGTTTGAGCTTCGTC 1316
Query 1317 TAAGCCATAGGAGACCTTTTT 1337
|||||||||||||||||||||
Sbjct 1317 TAAGCCATAGGAGACCTTTTT 1337
Score = 202 bits (109), Expect = 7e-51
Identities = 125/132 (95%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 1370 TTTTTAGTAGCTTTGTTTCTTGACTCTTCTTCTTTTCGTTTGCCTT-GACACTCTTCTTC 1428
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1335 TTTTTAGTAGCTTTGTTTCTTGACTCTTCTTCTTTTCGGTTGCCTTATACACTCTTCTTC 1394
Query 1429 A-TTTAAAGCTTTGTACAGTATTCCGTTAACATTTTTGAAAACCTTTTCTTTTAGTTTTG 1487
| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 1395 ATTTTAAAGCTTTGTACAGTATTCC-TTAACATTTTTGGAAAGCTTTTCTTTTAGTTTTG 1453
Query 1488 GTCAACTTTTTG 1499
||||||||||||
Sbjct 1454 GTCAACTTTTTG 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5