BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06676.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327041 jgi|Araly1|327041|fgenesh1_pm.C_scaffold_6002261 1502 0.0
> Ahg327041 jgi|Araly1|327041|fgenesh1_pm.C_scaffold_6002261
Length=963
Score = 1502 bits (813), Expect = 0.0
Identities = 914/964 (95%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 134 ATGAGATCAAAATCGAAGCAGGTGTTGCTACTATGGCTTGAGGGTTTTCGAGAAGCTTGT 193
||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 1 ATGAGATCAAAATCGAAGCAGGTGTTGTTACTATGGCTTTAGGGTTTCCGAGAAGCTTGT 60
Query 194 TCTCTTCACCGTGTTGTCATTCTCTGTCTCAGGTCGAGAAAGCTTCTCTTAAGAACTGGG 253
|||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||||
Sbjct 61 TCTCTTCACCGTGTTGTCATTCTCTGTCACAGGTCGAGAAAGCTACTATTACGAACTGGG 120
Query 254 CAGTGTTTTCTTTTGAATGGTTTGATTTTCTTAGGAAGTTTAGGTGTGTTTAAGTGGTTT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGTGTTTTCTTTTGAATGGTTTGATTTTCTTAGGAAGTTTAGGTGTGTTTAAGTGGTTT 180
Query 314 ATAGATCCATCCCTTCAGTGGATATTACCTGATCAGTGCTCTCCCCTCACTTCTCAAGAA 373
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAGATCCAGCCCTTCAGTGGATATTACCTGATCAGTGCTCTCCCCTCACTTCTCAAGAA 240
Query 374 TTTTGTTCGTATGGTGGATTTTACGCCTTTCTACGTGGTGGACTTTTGCAGCTCTTTTAC 433
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 241 TTTTGTTCGTATGGTGGATTTTATGCCTTTCTACGTGGTGGACTTGTGCAGCTCTTTTAC 300
Query 434 GTTTTTTGGTTCTATCCTCTGTACATGCTCAGCTTCATCTTGAGTAACATCTGGTATAAC 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTTTTTGGTTCTATCCTCTGTACATGCTCAGCTTCATCTTGAGTAACATCTGGTATAAT 360
Query 494 GATATTGCAAAGCATGGATTCGAGGCAATTGAGATATCTGACTTAAACTCAGCTGAAGCA 553
||||||||||| ||||| |||||||||||||| | ||||||| ||| |||||| ||||||
Sbjct 361 GATATTGCAAAACATGGGTTCGAGGCAATTGAAAAATCTGACATAAGCTCAGCAGAAGCA 420
Query 554 TTAAGACAAGGTGAAGCTCTGGCGTCCCTGAA-TATGGCAAATGCTGAAAGGCCTTCTGG 612
||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||
Sbjct 421 TTAAGACAAGGTGAAGCTCCGGCGTCACTGAACTC-GGCAAATGCTGAAAGGCCTTCTGG 479
Query 613 TCTTGGAGGGGTGATGATCGGTATAGGAGAGCAGGTGTACTCGATACTTCTCCTGACAtt 672
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 480 TCTTGGAGGGGTGATGATCGGTATTGGAGAGCAGGTGTATTCAATACTTCTCCTGACATT 539
Query 673 tttttttCTTGAGGTTTGTGTTGTTGGTGTTATACCATACATTGGGAAGATATTGAATTT 732
||||||||| ||||||| ||||||||||||||||||||| || ||||||||| |||||||
Sbjct 540 TTTTTTTCTGGAGGTTTATGTTGTTGGTGTTATACCATATATCGGGAAGATACTGAATTT 599
Query 733 CTTACTTCTTTCATGGATGTATGCCTACTATTGTTACGAATATAAGTGGAACTTCTCGGG 792
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 CTTACTTCTTTCATGGATGTATGCCTATTATTGTTACGAATATAAATGGAACTTCTCGGG 659
Query 793 GATTTCTCTGAAGAAAAGGCTGGACTTCTTTCAATCTAACTGGGCATTCTTTGCTGGTTT 852
|||| ||||| | |||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 660 GATTCCTCTGGACAAAAGGCTAGACTTCTTTGAATCTAACTGGGCATTCTTTACTGGTTT 719
Query 853 TGGAAGCCCCTGCGTGTTGGCCATTTTCTTTCTCTCGCCTCTTGTGAGCGGAGCGCTTAT 912
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGGAAGCCCCTGCGTGTTGGCCATTTTCTTTCTCTCGCCGCTTGTGAGCGGAGCGCTTAT 779
Query 913 GGCCATCTTATTTCCATTGTTTGTCTTAACTGCTACAGGATCAGGACCTGAAAAATTGAT 972
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 780 GGCCATCTTGTTTCCATTGTTTGTTTTAACTGCTACAGGATCAGGACCTGAAAAATCGAT 839
Query 973 TGGGGCCCCGAGAAGAACGTGGAAATGTGCAGGTTTAGGAAAGCTTCCAATATTCTATAT 1032
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
Sbjct 840 TGGGGCCCCGAGAAGAACATGGAAATGTGCAGGTTTAGGGAGGCTTCCAATATTCTATGT 899
Query 1033 TGCTGACACTCTCTCGATGTTGGCGTTGTCTATCTTCCGGTTGGAGTCCCCTCACGAGAA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 AGCTGACACTCTCTCGATGTTGGCGTTGTCTATCTTCCGGTTGGAGTCCCCGCACGAGAT 959
Query 1093 TTAA 1096
||||
Sbjct 960 TTAA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5