BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06744.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489688 jgi|Araly1|489688|fgenesh2_kg.6__2822__AT4G06744.1 2100 0.0
> Ahg489688 jgi|Araly1|489688|fgenesh2_kg.6__2822__AT4G06744.1
Length=1469
Score = 2100 bits (1137), Expect = 0.0
Identities = 1350/1450 (93%), Gaps = 26/1450 (2%)
Strand=Plus/Plus
Query 15 GTTATCATTTTGTATTTTACTTCCCAATGATTTCTCAATTTTTATAACGTTTTGA-ATTT 73
||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||
Sbjct 1 GTTATCATTTTGTATTTTACTTCCCAATGATTTATAAATTTTTATAACGTTTT-ATATTT 59
Query 74 CATAAACCTAGTGGCTAGTGA-TATGATACTCTCAAGAAACCTACCCACCTaaaaagaga 132
||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 60 CATAAACCTAGTGGCTAGT-AGTAAGAAACTCTCAAGAAACCTACCCACCTAAAAAGAGA 118
Query 133 gaaaaacaaaacaaaaGAATAGTAAGGCAC--TAAACACTAAAACTACCACTTCTCTTGT 190
|||||||||||||||| ||||||||||||| |||||||||| || ||| ||||||||||
Sbjct 119 GAAAAACAAAACAAAA-AATAGTAAGGCACAATAAACACTAAGACCACCTCTTCTCTTGT 177
Query 191 ATCGCCGACAAAGCTTTGTTCAGTGGCAAAGATGATGAATCATTTGCTTTTGGCTCTTTT 250
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 178 ATCGCCGACAAAGTTTTGTTCAGTGGCAAAGATGAAGAATCCTTTGCTTTTGGCTCTTTT 237
Query 251 CCTTGTTGGAACCATCGCCTTACCAGAT---------AGAGGAACTCAACAATTGACCAA 301
||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||
Sbjct 238 CCTTGTTGGCACCGTCGCTTTACCAGATAGAAGCAGCAGAGGAACTCAAGAATTGACCAA 297
Query 302 CGATGGCCTCACCGGCGCGAGGCGAG-AGATACTCTCTTTCTTAGACCAAAGACTTGCAG 360
|||||||||||||||| |||| | || | |||||||||||||| ||||||||||||||||
Sbjct 298 CGATGGCCTCACCGGCACGAGTCAAGCA-ATACTCTCTTTCTTTGACCAAAGACTTGCAG 356
Query 361 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTAA 416
Query 421 CCAAGACATGGATTGGTTCAGACATCTGCAGTTATAGAGGCTTCCACTGTGACAATCCTC 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CCAAGACATGGATTGGTTCAGACATCTGTAGTTATAGAGGCTTCCACTGTGACAATCCTC 476
Query 481 CTCACAACAAAACCGCAGTTACTGTTGCTTCCATCGATTTCAATGGCTTTCAGCTCTCTG 540
| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 477 CGGACAACACAACCGCAGTTACTGTCGCTTCTATCGATTTCAATGGCTTTCAGCTCTCTG 536
Query 541 CTCCATCCATCGAAGGATTTATCGATCAATTCGCTGACCTAGCTCTGTTTCATGTTAACT 600
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 537 CTCCCTCCATCGAAGGATTTATCGATCAATTCCCTGACTTAGCTCTGTTTCATGTTAACT 596
Query 601 CAAACAATTTTGGAGGTACGGTGCCTTCCAAGATAGTCAACCTCCGGTATCTCTATGAAC 660
| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || |
Sbjct 597 CCAACAACTTTGGAGGTACCGTGCCTTCCAAGATAGTCAACCTCAGGTATCTCTACGAGC 656
Query 661 TCGACATCAGCAACAATAGATTCACCGGTCAGTTTCCGACAGCTGTTGTTGGAATGTCCG 720
||||||||||||||||| |||||||||||||||||||||| || ||||| || |||||||
Sbjct 657 TCGACATCAGCAACAATCGATTCACCGGTCAGTTTCCGACCGCAGTTGTCGGTATGTCCG 716
Query 721 GTTTGACGTTTATTGACATCCGGTTCAACTCTTTCTCTGGTTCAATCCCACCACAAATCC 780
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 GTTTGACGTTTCTTGACATCCGGTTCAACTCTTTCTCTGGTTCAATTCCACCACAAATCC 776
Query 781 TCGGTCAGAACCTCGAAGTTCTCTTCATCAATGACAACGGCTTCACTGCGAGCCTCCCGG 840
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 777 TCGGTCAGAACCTCGAGGTTCTCTTCATCAATGACAATGGCTTCACTGCGAGCCTCCCCG 836
Query 841 AGATACCTGGTGAT-G-----GTACAACACACATTCTCTTCTTGACTTTAGCAAACAACA 894
|||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||
Sbjct 837 AGATACCTGGTGATGGTACAAGTACAACACACATTCTTTTCTTAACTTTTGCAAACAACA 896
Query 895 AGTTCAACGGTCCTCTCCCAAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 954
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGTTCAACGGTCCTCTGCCGAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 956
Query 955 TCTTCCTCAATAACGATTTTACGGGTTGTATCCCTCACGAGATCGGGTTCCTCACCGGAG 1014
||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 957 TCTTCTTGAATAACGATTTTACCGGTTGTATCCCTCACGAGATCGGGTTCCTCACGGGAG 1016
Query 1015 CATCAGTGATCGATATCGGTGGAAACAAGCTCAC-GGGTCCTTTGCCGCTTTCCCTAATG 1073
|||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1017 CATCAGTGATTGATATTGGTGGAAACAAGCTCACAGGG-CCTTTGCCGCTTTCCCTAATG 1075
Query 1074 TGTTTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTATTGTTTGGTGCCGTCCCG 1133
||| ||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1076 TGTCTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTCTTGTTTGGGGCAATCCCG 1135
Query 1134 GAGGCAGTATGCATGCTGCTCCGGGACAATCTTGTCAACTTGTCGTTGTCGGATAACTAT 1193
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 GAGGCAGTTTGCATGCTGCTCCGGGACAATCTTGTCAACTTATCGTTGTCGGATAACTAT 1195
Query 1194 TTCACGCACGTAGGGCCTTGGTGTAGGGGTTTACTTGAAAAAGGTGTTCTTGACGTTGGT 1253
|||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||| ||
Sbjct 1196 TTCACGCATGTAGGGCCTTGGTGTAGGGGTTTGCTTGACAGAGGTGTACTTGACGTTAGT 1255
Query 1254 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGTGCGGAGTTCTTT 1313
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1256 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGCGCGGAGTTCTTT 1315
Query 1314 GTAAAACCTAAGAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1373
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GTCAAACCTAAAAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1375
Query 1374 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTTTCATGCCCATGGTGGCTCCCTCTCCT 1433
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1376 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTGTCATGCCCATGGTGGCTCCCTCACCT 1435
Query 1434 TAATGTTCAT 1443
|||||| |||
Sbjct 1436 TAATGTACAT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5