BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G06744.1 Length=1493 Score E Sequences producing significant alignments: (Bits) Value Ahg489688 jgi|Araly1|489688|fgenesh2_kg.6__2822__AT4G06744.1 2100 0.0 > Ahg489688 jgi|Araly1|489688|fgenesh2_kg.6__2822__AT4G06744.1 Length=1469 Score = 2100 bits (1137), Expect = 0.0 Identities = 1350/1450 (93%), Gaps = 26/1450 (2%) Strand=Plus/Plus Query 15 GTTATCATTTTGTATTTTACTTCCCAATGATTTCTCAATTTTTATAACGTTTTGA-ATTT 73 ||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||| Sbjct 1 GTTATCATTTTGTATTTTACTTCCCAATGATTTATAAATTTTTATAACGTTTT-ATATTT 59 Query 74 CATAAACCTAGTGGCTAGTGA-TATGATACTCTCAAGAAACCTACCCACCTaaaaagaga 132 ||||||||||||||||||| | || || |||||||||||||||||||||||||||||||| Sbjct 60 CATAAACCTAGTGGCTAGT-AGTAAGAAACTCTCAAGAAACCTACCCACCTAAAAAGAGA 118 Query 133 gaaaaacaaaacaaaaGAATAGTAAGGCAC--TAAACACTAAAACTACCACTTCTCTTGT 190 |||||||||||||||| ||||||||||||| |||||||||| || ||| |||||||||| Sbjct 119 GAAAAACAAAACAAAA-AATAGTAAGGCACAATAAACACTAAGACCACCTCTTCTCTTGT 177 Query 191 ATCGCCGACAAAGCTTTGTTCAGTGGCAAAGATGATGAATCATTTGCTTTTGGCTCTTTT 250 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 178 ATCGCCGACAAAGTTTTGTTCAGTGGCAAAGATGAAGAATCCTTTGCTTTTGGCTCTTTT 237 Query 251 CCTTGTTGGAACCATCGCCTTACCAGAT---------AGAGGAACTCAACAATTGACCAA 301 ||||||||| ||| |||| ||||||||| |||||||||||| |||||||||| Sbjct 238 CCTTGTTGGCACCGTCGCTTTACCAGATAGAAGCAGCAGAGGAACTCAAGAATTGACCAA 297 Query 302 CGATGGCCTCACCGGCGCGAGGCGAG-AGATACTCTCTTTCTTAGACCAAAGACTTGCAG 360 |||||||||||||||| |||| | || | |||||||||||||| |||||||||||||||| Sbjct 298 CGATGGCCTCACCGGCACGAGTCAAGCA-ATACTCTCTTTCTTTGACCAAAGACTTGCAG 356 Query 361 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 357 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTAA 416 Query 421 CCAAGACATGGATTGGTTCAGACATCTGCAGTTATAGAGGCTTCCACTGTGACAATCCTC 480 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 417 CCAAGACATGGATTGGTTCAGACATCTGTAGTTATAGAGGCTTCCACTGTGACAATCCTC 476 Query 481 CTCACAACAAAACCGCAGTTACTGTTGCTTCCATCGATTTCAATGGCTTTCAGCTCTCTG 540 | |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 477 CGGACAACACAACCGCAGTTACTGTCGCTTCTATCGATTTCAATGGCTTTCAGCTCTCTG 536 Query 541 CTCCATCCATCGAAGGATTTATCGATCAATTCGCTGACCTAGCTCTGTTTCATGTTAACT 600 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 537 CTCCCTCCATCGAAGGATTTATCGATCAATTCCCTGACTTAGCTCTGTTTCATGTTAACT 596 Query 601 CAAACAATTTTGGAGGTACGGTGCCTTCCAAGATAGTCAACCTCCGGTATCTCTATGAAC 660 | ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || | Sbjct 597 CCAACAACTTTGGAGGTACCGTGCCTTCCAAGATAGTCAACCTCAGGTATCTCTACGAGC 656 Query 661 TCGACATCAGCAACAATAGATTCACCGGTCAGTTTCCGACAGCTGTTGTTGGAATGTCCG 720 ||||||||||||||||| |||||||||||||||||||||| || ||||| || ||||||| Sbjct 657 TCGACATCAGCAACAATCGATTCACCGGTCAGTTTCCGACCGCAGTTGTCGGTATGTCCG 716 Query 721 GTTTGACGTTTATTGACATCCGGTTCAACTCTTTCTCTGGTTCAATCCCACCACAAATCC 780 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 717 GTTTGACGTTTCTTGACATCCGGTTCAACTCTTTCTCTGGTTCAATTCCACCACAAATCC 776 Query 781 TCGGTCAGAACCTCGAAGTTCTCTTCATCAATGACAACGGCTTCACTGCGAGCCTCCCGG 840 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 777 TCGGTCAGAACCTCGAGGTTCTCTTCATCAATGACAATGGCTTCACTGCGAGCCTCCCCG 836 Query 841 AGATACCTGGTGAT-G-----GTACAACACACATTCTCTTCTTGACTTTAGCAAACAACA 894 |||||||||||||| | |||||||||||||||| ||||| ||||| |||||||||| Sbjct 837 AGATACCTGGTGATGGTACAAGTACAACACACATTCTTTTCTTAACTTTTGCAAACAACA 896 Query 895 AGTTCAACGGTCCTCTCCCAAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 954 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 897 AGTTCAACGGTCCTCTGCCGAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 956 Query 955 TCTTCCTCAATAACGATTTTACGGGTTGTATCCCTCACGAGATCGGGTTCCTCACCGGAG 1014 ||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 957 TCTTCTTGAATAACGATTTTACCGGTTGTATCCCTCACGAGATCGGGTTCCTCACGGGAG 1016 Query 1015 CATCAGTGATCGATATCGGTGGAAACAAGCTCAC-GGGTCCTTTGCCGCTTTCCCTAATG 1073 |||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1017 CATCAGTGATTGATATTGGTGGAAACAAGCTCACAGGG-CCTTTGCCGCTTTCCCTAATG 1075 Query 1074 TGTTTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTATTGTTTGGTGCCGTCCCG 1133 ||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 1076 TGTCTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTCTTGTTTGGGGCAATCCCG 1135 Query 1134 GAGGCAGTATGCATGCTGCTCCGGGACAATCTTGTCAACTTGTCGTTGTCGGATAACTAT 1193 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1136 GAGGCAGTTTGCATGCTGCTCCGGGACAATCTTGTCAACTTATCGTTGTCGGATAACTAT 1195 Query 1194 TTCACGCACGTAGGGCCTTGGTGTAGGGGTTTACTTGAAAAAGGTGTTCTTGACGTTGGT 1253 |||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||| || Sbjct 1196 TTCACGCATGTAGGGCCTTGGTGTAGGGGTTTGCTTGACAGAGGTGTACTTGACGTTAGT 1255 Query 1254 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGTGCGGAGTTCTTT 1313 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1256 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGCGCGGAGTTCTTT 1315 Query 1314 GTAAAACCTAAGAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1373 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 GTCAAACCTAAAAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1375 Query 1374 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTTTCATGCCCATGGTGGCTCCCTCTCCT 1433 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1376 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTGTCATGCCCATGGTGGCTCCCTCACCT 1435 Query 1434 TAATGTTCAT 1443 |||||| ||| Sbjct 1436 TAATGTACAT 1445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55878389415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5