BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G06746.1
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489689 jgi|Araly1|489689|fgenesh2_kg.6__2823__AT4G06746.1 785 0.0
Ahg922994 jgi|Araly1|922994|scaffold_104275.1 117 9e-26
Ahg951503 jgi|Araly1|951503|scaffold_803390.1 110 2e-23
> Ahg489689 jgi|Araly1|489689|fgenesh2_kg.6__2823__AT4G06746.1
Length=544
Score = 785 bits (425), Expect = 0.0
Identities = 507/546 (93%), Gaps = 7/546 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATTCAATACAAACGAAAACAAGAGTTTCCTATGGTGAAAGAAGGAATGGTCATG 60
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGATTGAATACAAACGAAAACAAGACTTTCCTATGGTGAAAGAAGGAATGGTCATG 60
Query 61 ACCGAGAAGCCAAAGAGGAATCTCATAAGCTCTAATGAGAAGCGATACAAAGGAATAAGG 120
| |||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 61 AACGAGAAGCCAAAGAGGAATCTCATGAGCCCCAATGAGAAGCGATACAAAGGGATAAGG 120
Query 121 ATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAGAGCCTAATAAACGATCACGGATC 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATAAGAGAGCCTAACAAACGATCACGGATC 180
Query 181 TGGCTTGGTTCATACAAAACCGCCGTTGCCGCGGCACGGGCCTACGATACCGCTGTGTTT 240
||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 181 TGGCTTGGTTCTTACAAAACCGCGGTTGCAGCGGCACGTGCCTATGACACCGCTGTGTTT 240
Query 241 TACTTACGTGGTCCTTCGGCGAGACTCAATTTCCCTGAAGAGGTCTTTA-AGGATGGAAA 299
|| ||||||||||| |||||||||||||||||||| ||| ||||| ||| | ||||||||
Sbjct 241 TATTTACGTGGTCCATCGGCGAGACTCAATTTCCCCGAACAGGTC-TTACAAGATGGAAA 299
Query 300 CGGCGGTGAAGGCT-TAGGAGGAGATATGTCTCCGACGTTGATACGGAAGAAGGCGGCTG 358
|||||||||||| | |||||||||| |||||| |||||||||||||| |||||||||| |
Sbjct 300 CGGCGGTGAAGG-TGTAGGAGGAGACATGTCTGCGACGTTGATACGGCAGAAGGCGGCGG 358
Query 359 AGGTGGGAGCTAGAGTCGACGCAGAGTTGCGGTTAGAGAATAGGATGGTTGAGAACTTAG 418
|||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||
Sbjct 359 AGGTGGGAGCTAGAGTCGACGCGGAACTGCGGTTAGAGAATACGATGGTTGAGAAATTAG 418
Query 419 ACATGAATAAGTTGCCGGAGGCATATGGATTGTAA---TTTATAGTTTGGTAGTTTATAG 475
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 ACATTAATAAGTTGCCGGAGGCATATGGATTGTAATTTTTTATAGTTTGGTAGTTTATAG 478
Query 476 GTTGGAGATTGCCCGGAGACAGAGTCAAACAGAGGTTCTCTGACTCATATGAGGCATAAT 535
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 479 GTTGGAGATTGCCCGGAGACAGAGTTAAACAGAGGTTCTCTGACTCATATGAGGCTTAAT 538
Query 536 ATAGTT 541
||||||
Sbjct 539 ATAGTT 544
> Ahg922994 jgi|Araly1|922994|scaffold_104275.1
Length=511
Score = 117 bits (63), Expect = 9e-26
Identities = 141/179 (79%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 99 GAAG-CGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAG 157
|||| || |||| ||| ||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 106 GAAGCCG-TACAGAGGGATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTG 164
Query 158 AGCCTAATAAACGATCACGGATCTGGCTTGGTTCATACAAAACCGCCGTTGCCGCGGC-A 216
||||||| ||||| ||||| | ||||| || ||||||| ||||| || ||||| || |
Sbjct 165 AGCCTAACAAACGTTCACGTCTTTGGCTCGGCTCATACACAACCGATGTCGCCGCCGCTA 224
Query 217 CGGGCCTACGATACCGCTGTGTTTTACTTACGTGGTCCTTCGGCGAGACTCAATTTCCC 275
| |||||||| ||| || || ||| | ||||| || || ||| | ||||| |||||
Sbjct 225 -GAGCCTACGACGTCGCCGTCTTCTACCTCCGTGGCCCCTCCGCGCGCCTCAACTTCCC 282
> Ahg951503 jgi|Araly1|951503|scaffold_803390.1
Length=601
Score = 110 bits (59), Expect = 2e-23
Identities = 139/177 (79%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 106 TACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAGAGCCTAAT 165
||||||||||||||||||||||||||||| |||||||| || ||||| ||||||| ||
Sbjct 81 TACAAAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTCGCGGAGATTCGAGAGCCAAAC 140
Query 166 AAACGATC-ACGGATCTGGCTTGGTTCATACAAAACCGCCGTTGCCG-CGGCACGGGCCT 223
||||| || | || | |||||||| || ||| || ||| | || |||| || || |
Sbjct 141 AAACGGTCTA-GGTTATGGCTTGGCTCTTACTCTACT-CCGGAGGCGGCGGCGCGAGCTT 198
Query 224 ACGATACCGCTGTGTTT-TA-CTTACGTGGTCCTTCGGCGAGACTCAATTTCCCTGA 278
|||| || || || ||| || |||| | || ||| |||||||||| || ||||||||
Sbjct 199 ACGACACGGCCGT-TTTCTATCTTA-GAGGACCTACGGCGAGACTTAACTTCCCTGA 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21367129840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5