BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07390.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942533 jgi|Araly1|942533|scaffold_603077.1 1171 0.0
Ahg950690 jgi|Araly1|950690|scaffold_802577.1 623 8e-178
> Ahg942533 jgi|Araly1|942533|scaffold_603077.1
Length=748
Score = 1171 bits (634), Expect = 0.0
Identities = 713/751 (95%), Gaps = 5/751 (1%)
Strand=Plus/Plus
Query 53 AAGAT-CAA-CTCAAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGAT 110
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGATCCAAGCGCAAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGAT 60
Query 111 CTCTCCGGAACGGTGACTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTC 170
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCCGGAACGGTGAGTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTC 120
Query 171 TCGGTTATTGCCTCGTTGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCG 230
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGTTATTGCCTCGTCGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCG 180
Query 231 TTCAACATAAGAGTGTACGAGGCTTAAGTGTTGTGGCATTTGAGCTTGAAGTTGTTGGTT 290
| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 181 TGCAACATAAGAGTGTGCGAGGCTTAAGTGTTATGGCATTTGAGCTTGAAGTGGTTGGTT 240
Query 291 ACACAATTTCACTTGCTTATTGTTTGCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACACAATTTCACTTGCTTATTGTTTGCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAA 300
Query 351 TGGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTATTCACAAC 410
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 301 TGGCTTTTCTTTTGATTCAAGCTTTAATCTTGGTTGCTTGTATCTATTATTATTCTCAAC 360
Query 411 CAGTACCTGTCACAACTTGGATTAGACCACTTCTATATTGCGCTGTGGCGCCAACTGTGC 470
|||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 361 CAGTACCTGTAACAACTTGGATCAGACCACTTCTATATTGTGCTGTGGCACCAACTGTGC 420
Query 471 TTGCTGGACAGATTAATCCGACGCTTTTCGAAGCTCTTTATGCTTCACAACATGCGATAT 530
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGCTGGACAGATAAATCCTACGCTTTTCGAAGCTCTTTATGCTTCACAACATGCGATAT 480
Query 531 TTCTCTTTGCAAGACTCCCTCAGATATGGAAGAACTTTAAAAACAAAAGCACTGGAGAAC 590
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 481 TTCTCTTTGCAAGACTCCCTCAGATATGGAAGAACTTCAAAAACAAAAGCACCGGAGAAC 540
Query 591 TTAGTTTCTTAACTTTCTTCATGAACTTTGCCGGGTCAATAGTGAGAGTTTTCACCAGCT 650
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 541 TTAGTTTCTTAACTTTCTTCATGAACTTTGCCGGTTCGATAGTGAGAGTTTTCACCAGCC 600
Query 651 TACAGGAAAAAGCTCCAATTAGCATTCTTACGGGTTTCGCTCTTGGAGTCGTCACCAACG 710
| |||||||| |||||| | ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 601 TCCAGGAAAAGGCTCCACTAAGCATTCTTACCGGTTTTGCTCTTGGAGTCGTCACCAACG 660
Query 711 GAAGCATCCTGACGCAGATTCTCTTGTACTCGAAGCCTGCTGCTGCAAAGGAGAAGAAAG 770
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 661 GAAGCATCCTGACGCAGATTCTCTTGTATTCTAAGCCTGCTGCAGCAAAGGAGAAGAAAA 720
Query 771 CCAATTGATAGGTAGAAAGATATCCTAAATC 801
| ||||||| ||||||||| |||||||||
Sbjct 721 CTAATTGAT---TAGAAAGATGTCCTAAATC 748
> Ahg950690 jgi|Araly1|950690|scaffold_802577.1
Length=760
Score = 623 bits (337), Expect = 8e-178
Identities = 583/698 (84%), Gaps = 32/698 (5%)
Strand=Plus/Plus
Query 64 AAAATCAATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGATCTCTCCGGAACGG 123
|||| ||||||||||||| ||||| || |||||||||| |||||| ||||||| |||||
Sbjct 15 AAAA-CAATGGATTATCTAGGAATTGATTTGAGCTGCGCAATCGGAACTCTCCGTAACGG 73
Query 124 TGACTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTCTCGGTTA-TTGCC 182
||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 74 TGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTGCTCGGTTACTT-CC 132
Query 183 TCGTTGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCGTTCAAC-ATAAG 241
|||| ||||||||||| ||||||||||| ||||||||||||||||||| | || | |||
Sbjct 133 TCGTCGCTGCTTCAATGACCGTCAAGCTTCCTCAGATAATGAAAATCG-TGGACAACAAG 191
Query 242 AGTGTACGAGGCTTAAGTGTTGTGGCATTTGAGCTTGAAGTTGTTGGTTACACAATTTCA 301
|||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 192 AGTGTAAAAGGCTTAAGTGTTGTAGCATTTGAGCTTGAAGTGGTTGGTTACACAATCGCA 251
Query 302 CTTGCTTATTGT-TT-GCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAATGGCTTTTC 359
|||||||||||| || || ||| | |||| ||||| ||||| || ||| | |||||||
Sbjct 252 CTTGCTTATTGTCTTAACA-AAAAG-CTTCATTTTTCAGCTTTTGGTGAATTAGCTTTTC 309
Query 360 TTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTAT-TCACAACCAGTAC-C 417
|||||||||||||||||||||||||||||||||||||||||| | || ||||| | | |
Sbjct 310 TTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATT-TCTCTCAACCTCT-CTC 367
Query 418 TGTCACAACTTGGATTAGACCACTTCTATA-TTGCGCTGTGGCGCCAACTGTGCTTGCTG 476
||| ||||||||| | | | || |||| || || ||| | || ||||||||| ||||||
Sbjct 368 TGTAACAACTTGGGTCAAAGCAATTCTTTACTTT-GCTTTAGCACCAACTGTGTTTGCTG 426
Query 477 G-ACAGATTAATCCGACGCTTTTCGAAGCTCTTTATGCTTCACAA-CATGCGATATTTCT 534
| | ||||| |||| |||||||||||||||||||||||| || ||| |||||||||
Sbjct 427 GTA-AGATTGATCCTTTGCTTTTCGAAGCTCTTTATGCTTCT-AAGCATTTGATATTTCT 484
Query 535 CTTTGCAAGACTCCCTCAGATATGGAAGAACTTTAA-AAACAAAAGCACTGGAGAACTTA 593
|| ||||||| |||||||||| |||||||| ||| | |||||||||||||||| ||||||
Sbjct 485 CTCTGCAAGAATCCCTCAGATTTGGAAGAA-TTTCAGAAACAAAAGCACTGGACAACTTA 543
Query 594 GTTTCTTAACTT-TCTTCATGAACTTTGCCGG-GTCAATAGTGAGAGTTTTCACCAGC-T 650
||||||| |||| ||| ||||||||||| || | | || | |||||||||||||||| |
Sbjct 544 GTTTCTTGACTTGTCT-CATGAACTTTGGTGGAG-CTATGGCGAGAGTTTTCACCAGCAT 601
Query 651 TACAGGAAAAAGCTCCAATTAGCATTCTTACGGGT-TTCGCTCTTGGAGTCGTCACCAAC 709
| || || || ||||| ||||||| |||| |||| || | ||||| | || |||||||
Sbjct 602 T-CAAGAGAAGGCTCCCCTTAGCATGCTTATGGGTATT-GTTCTTGCAATCTTCACCAAT 659
Query 710 GGAAGCATCCTGACG-CAGATTCTCTTGTACTCGAAGC 746
|||| ||| ||| | ||||| || ||||| |||||||
Sbjct 660 GGAATCATTATGA-GTCAGATGCTTTTGTA-TCGAAGC 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5