BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07400.1
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894873 jgi|Araly1|894873|Al_scaffold_0006_2869 2071 0.0
> Ahg894873 jgi|Araly1|894873|Al_scaffold_0006_2869
Length=1641
Score = 2071 bits (1121), Expect = 0.0
Identities = 1475/1643 (90%), Gaps = 35/1643 (2%)
Strand=Plus/Plus
Query 43 GTTGTTTGCGACAATTTATCCAAAACCAGAGGGAGTAGGCGGGAACATTGTGAACCGCAT 102
|||||| || |||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 14 GTTGTTGGCAACAA-TTATCCAAAACCGGAGGGAGTAGGCGGGAACACTGTGAACCGCAT 72
Query 103 CGCCGTCGAATGGGCCAATCCACTTCCAAATTCCGGCGATCTAAAACTACCTTCACTTCT 162
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 73 CGCCGTCGAATGGGCCAATCCACTTCCACATTCCGGCGATCTAAAGCTAGCTTCACTTCT 132
Query 163 CCGGTACTACCTAATTTACGG-GAACAAAACTCTGGTGCCGATGAGCCGTACGATTACAT 221
|||||||||||||| | | || ||||| ||||| |||| ||||||||||||||||| |
Sbjct 133 CCGGTACTACCTAA-TGAAGGCGAACATAACTCCGGTGGCGATGAGCCGTACGATTGTAC 191
Query 222 TTCTAACTTACCAGACGAATGCTTATCTTTAATTTTCCAATCGCTAACTTGCGCCGACCT 281
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 192 TTCTAACTTACCAGACGAATGTTTATCGTTGATTTTCCAATCGCTAACTTGCGCCGACCG 251
Query 282 AAAACGTTGCTCACTGGTGTGTCGTCGGTGGTTAACAATTGAAGGACAGTGTCGTCATCG 341
|||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 252 GAAACGTTGCTCACTTGTATGTCGTCGCTGGTTAACGATTGAAGGACAGTGTCGTCATCG 311
Query 342 TCTCTCTCTCAAAGCACAATCAGATCTTATTTCAGTGATACCATCTCTATTTACTCGGTT 401
||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| |||||||
Sbjct 312 TCTTTCTCTCAAAGCTCAGTCAGATCTTATCTCAGTCATACCTTCTCTCTTTTCTCGGTT 371
Query 402 TGATTCTGTTACTAAACTTGTTCTTAGAAGTGACCGTAGATCACTTGGTATATGTGACAA 461
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 372 TGATTCTGTTACTAAGCTTGTTCTTAGAAGTGACCGTAGATCTCTTGGTATTTGTGATAA 431
Query 462 CGCATTCGTTATGATTTCTGTTAGATGTCGGAATTTAACGCGGTTGAAGTTACGCGGTTG 521
|||||||||||||||||| | ||||||||||||| | |||||||||||| | ||||||||
Sbjct 432 CGCATTCGTTATGATTTCGGCTAGATGTCGGAATCTGACGCGGTTGAAGCTGCGCGGTTG 491
Query 522 TCCG-GAGATTTCGGATTTAGGGATTATAGGTTTCACTGAGAATTGTAGGAGTTTGAAGA 580
||| ||||| || ||| |||||| | | |||| ||| ||||||||||||||||||||
Sbjct 492 -CCGCGAGATCTCAGATAAAGGGATGGTTGCTTTCTCTGGGAATTGTAGGAGTTTGAAGA 550
Query 581 AGGTTTCATTTGGATCTTGTGGGTTTGGTGTTAAAGGAATGAATGCTTTGTTGAATACTT 640
| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 551 AAGTATCATTTGGATCTTGTGGGTTTGGGGTTAAAGGAGTGAATGCTTTGTTGAATAATT 610
Query 641 GTTTAGGTCTAGAGGAATTGTCGGTTAAACGGTTACGCGG-------AA--T--C-GGTG 688
||||||||||||||||||||||||| |||||||||||||| || | | ||||
Sbjct 611 GTTTAGGTCTAGAGGAATTGTCGGTGAAACGGTTACGCGGAATTAATAATGTAGCTGGTG 670
Query 689 CTGGTGCTGAGCTTATAGGACCTGGG-GGAGCTGCGGGTTCGTTGAAGGTTATTTGCTTA 747
|||||| |||||||||||| || ||| | ||||||||||||||||||| | |||||||||
Sbjct 671 CTGGTGTTGAGCTTATAGG-CCCGGGAGCAGCTGCGGGTTCGTTGAAGATGATTTGCTTA 729
Query 748 AAGGAGCTGCATAATGGTCAGTGTTTTGCTCCATTGTTAAGTGGAGCTAAAGGACTTAGG 807
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 730 AAGGAGCTGCATAATGGTCAGTGTTTTGCTCCGTTGTTAAGCGGAGCTAAAGGTCTTAGG 789
Query 808 ATTTTGAAGATTTTCAGGTGTTCAGGGGATTGGGATCGGGTTTTTGAGGCGGTTCGTGAT 867
| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || ||
Sbjct 790 ACTTTGAAGATTTTCAGATGTTCAGGGGATTGGGATCGGGTTTTTCAGGAGGTAGGTAAT 849
Query 868 AAGGTTAACGCTATTGTTGAGATACATTTAGAGAGGATTCAGATGAGTGATTTGGGTTTA 927
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 850 CAGGTTAATGCTATTGTTGAGATACATTTAGAGAGGATTCAGATGAGTGATTTGGGTCTA 909
Query 928 ACCGCGTTATCGAAATGTTCGGGTGTTGAGGTTCTGCATCTTGTGAAAACTCCTGATTGT 987
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 910 ACTGCGTTATCGAAATGTTCGGGTGTTGAGGTTCTGCACCTTGTGAAAACTCCTGACTGC 969
Query 988 ACGAATGTTGGTTTAGCTTTGGTGGCTGAGCGTTGTAAA-TTGCTAAGGAAGCTTCATAT 1046
|||||||||||| | |||||||||||||| ||||||||| || ||||| |||||||| ||
Sbjct 970 ACGAATGTTGGTCTGGCTTTGGTGGCTGAACGTTGTAAACTT-CTAAGAAAGCTTCACAT 1028
Query 1047 TGATGGATGGAAGACGAATCGAATAGGCGATGAGGGGCTTATAGTTGTTGCTAAGTACTG 1106
||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct 1029 TGATGGATGGAAGACAAATCGAATTGGCGATGAAGGGCTTATAGTAGTTGCTAAGTCCTG 1088
Query 1107 TTGGAATTTGCAGGAGTTGGTTTTGATTGGTGTGAATCCTACTAAGTTAAGTTTGGAAGC 1166
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1089 TTGGAATTTGCAGGAGTTGGTTTTGATTGGTGTGAACCCTACAAAGTTAAGTTTGGAAGC 1148
Query 1167 GATTGTTTCGAATTGTCTTAACTTGGAGAGATTGGCATTGTGTGGAAGTGATACGGTAGG 1226
||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1149 AATTGTCTCAAATTGTCTTAACTTGGAGCGATTGGCATTGTGTGGAAGTGATACTGTAGG 1208
Query 1227 TGACACTGAGTTATGTTGTATTGCTGAGAAATGTTTGGCGTTGAGGAAGCTTTGTATTAA 1286
|||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 1209 TGACACCGAGCTATGTTGTATTGCTGAAAAATGTTTGGCATTGAGGAAGCTTTGCATCAA 1268
Query 1287 GAACTGTCCTATTACTGATGATGGCATCAAAGCTCTTGGGAACGGATGTCCGAATCTGCT 1346
|||||| || |||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1269 GAACTGCCCCATTACTGATGATGGAATCAAAGCTCTTGGGACCGGATGCCCGAATCTGCT 1328
Query 1347 AAAAGTGAAGGTTAAGAAGTGTAGAGGAGTGACTACTC-AAGGAGCTGATTTGTTAAGGA 1405
|||||||||||||||||||||||||||||| || || | ||||||||||| |||||||||
Sbjct 1329 AAAAGTGAAGGTTAAGAAGTGTAGAGGAGTAACCAC-CGAAGGAGCTGATCTGTTAAGGA 1387
Query 1406 AAAGAAGGGCGTTGCTTGTTGTCAATTTAGATGCGCCCGAGACACCAATTGTTGAGGGTA 1465
||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |
Sbjct 1388 CAAGAAGGGCGTTGCTTGTTGTCAATTTAGATACTCCCGAGACACCAATTGCCGAGG-T- 1445
Query 1466 GTGTCGGTGAAGGTGGAGCACAGGAGAATGCAGTTGAGTTCCCTCCTTCCAGACTCCAAA 1525
| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 1446 ----CAATGAAGGTGGAGCACAGGCGGATGCAGTTGAGTTCCCTCCATCCAGACTCCAAA 1501
Query 1526 TTCCAACCATAGGCCTTGCATCTGGTAGCACCAGCCGGTCATCCTCGTTTAAGTTACGAT 1585
| |||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1502 TACCAACCCTAGGCATTGCATCTGGTAGCACCAGCCGGTCAACCTCGTTTAAGTCACGAT 1561
Query 1586 TGGGGTTTTT-GAGCCAGAGGAA-CTTTGTT-TCTTGTGCACTGAGAAGGTTGGGAAGTC 1642
| || |||| ||| | | |||| ||| ||| | ||||||||||||||||||||||||||
Sbjct 1562 TAGG-TTTTACGAGTCGG-GGAAACTTAGTTGT-TTGTGCACTGAGAAGGTTGGGAAGTC 1618
Query 1643 GAAGCAGGTCCCGGAATGAATAG 1665
| ||||||||||||||||| |||
Sbjct 1619 GTAGCAGGTCCCGGAATGATTAG 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5