BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G07526.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931110 jgi|Araly1|931110|scaffold_303567.1 486 8e-137
Ahg336838 jgi|Araly1|336838|fgenesh1_pg.C_scaffold_1003403 466 1e-130
Ahg891033 jgi|Araly1|891033|Al_scaffold_0007_3019 444 5e-124
Ahg344503 jgi|Araly1|344503|fgenesh1_pg.C_scaffold_4000845 431 4e-120
Ahg917228 jgi|Araly1|917228|Al_scaffold_0008_1979 425 2e-118
Ahg327748 jgi|Araly1|327748|fgenesh1_pm.C_scaffold_6002968 359 2e-98
Ahg481453 jgi|Araly1|481453|fgenesh2_kg.4__513__AT3G33528.1 333 1e-90
Ahg347316 jgi|Araly1|347316|fgenesh1_pg.C_scaffold_5000708 315 4e-85
Ahg923793 jgi|Araly1|923793|scaffold_105074.1 276 2e-73
Ahg336279 jgi|Araly1|336279|fgenesh1_pg.C_scaffold_1002844 233 1e-60
Ahg323054 jgi|Araly1|323054|fgenesh1_pm.C_scaffold_5000598 156 3e-37
> Ahg931110 jgi|Araly1|931110|scaffold_303567.1
Length=466
Score = 486 bits (263), Expect = 8e-137
Identities = 330/361 (91%), Gaps = 9/361 (2%)
Strand=Plus/Plus
Query 410 CGAATATAGAGAATTGAGAGATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAA 469
|||||| | |||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 CGAATAGAAAGAATTAAGAGATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAA 60
Query 470 GTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTT 528
|| || |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 GT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTT 119
Query 529 GAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAG 588
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GA------GTTTCTTGGAGAAAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAG 173
Query 589 GCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTT 648
||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 174 GCTAAAGATATGTCTCAATCACAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTT 233
Query 649 GAGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGC 708
||||||||||| |||||||||||| |||| ||||||||||| |||| ||||||||||||
Sbjct 234 GAGGACAGTGACATAGATGAAGACTGCAGTATTTGGGGAAAATCTAATAGAAAAGGTAGC 293
Query 709 AAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTA 767
| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 294 AGTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTA 353
Query 768 A 768
|
Sbjct 354 A 354
> Ahg336838 jgi|Araly1|336838|fgenesh1_pg.C_scaffold_1003403
Length=690
Score = 466 bits (252), Expect = 1e-130
Identities = 303/326 (93%), Gaps = 9/326 (3%)
Strand=Plus/Plus
Query 445 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACC 503
||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||
Sbjct 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338
Query 504 GATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAA 563
|||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 339 GATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGAAAGTAAAGGTACAAA 392
Query 564 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTC 623
|||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452
Query 624 AGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 683
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512
Query 684 GGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAGAC 742
|||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572
Query 743 TACAACAACCTATGAAGCTGAGCTAA 768
|||||||| |||||||||||||||||
Sbjct 573 TACAACAAGCTATGAAGCTGAGCTAA 598
> Ahg891033 jgi|Araly1|891033|Al_scaffold_0007_3019
Length=426
Score = 444 bits (240), Expect = 5e-124
Identities = 310/342 (91%), Gaps = 11/342 (3%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| |||||||||||||||||||| ||||||| ||| |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTAATCTAAG-CAAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATTGTCTTGA------GTTTCTTGAAGA 113
Query 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTC-ATT 607
||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 114 AAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGACATGTCTCAATT 173
Query 608 CGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATG 667
|||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 174 -GCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGTGACATAGATG 232
Query 668 AAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTA 726
||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 233 AAGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTA 292
Query 727 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 293 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAACTAA 334
> Ahg344503 jgi|Araly1|344503|fgenesh1_pg.C_scaffold_4000845
Length=444
Score = 431 bits (233), Expect = 4e-120
Identities = 307/341 (90%), Gaps = 12/341 (4%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
Query 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173
Query 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
|||| |||| ||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 174 GCAGGTTGATTTTTC---AGATATAATGAATCTCGTCGTTGACGACAGTGACATAGATGA 230
Query 669 AGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAA 727
|||| | || ||||||| ||| |||||||||||||||||| | |||||||| |||||||
Sbjct 231 AGACTGCTGTATTTGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAA 290
Query 728 GAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
|||||||||||||||||||||||||| ||||||||||||||
Sbjct 291 GAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 331
> Ahg917228 jgi|Araly1|917228|Al_scaffold_0008_1979
Length=423
Score = 425 bits (230), Expect = 2e-118
Identities = 307/342 (90%), Gaps = 14/342 (4%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| ||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
Query 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173
Query 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
|||| |||| ||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 174 GCAGGTTGATTTTTC---AGATATAATGAATCTCGTCGTTGACGACAGTGACATAGATGA 230
Query 669 AGACAACAGTCTTTGGGGA-AAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTA 726
|||| | || ||| |||| ||| |||||||||||||||||| | |||||||| ||||||
Sbjct 231 AGACTGCTGTATTT-GGGAGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTA 289
Query 727 AGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
||||||||||||||||||||||||||| ||||||||||||||
Sbjct 290 AGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 331
> Ahg327748 jgi|Araly1|327748|fgenesh1_pm.C_scaffold_6002968
Length=303
Score = 359 bits (194), Expect = 2e-98
Identities = 249/274 (91%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
Query 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173
Query 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 174 GCAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGA 233
Query 669 AGACA--ACAGTCTTTGGGGAAAACCTAAGAGAA 700
|||| ||||| ||| |||||||||||||||
Sbjct 234 AGACTGCACAGTATTTTTCGAAAACCTAAGAGAA 267
> Ahg481453 jgi|Araly1|481453|fgenesh2_kg.4__513__AT3G33528.1
Length=246
Score = 333 bits (180), Expect = 1e-90
Identities = 232/255 (91%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
Query 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAGTC 173
Query 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCAGGTTGAGTTTTC---AGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 230
Query 669 AGACAACAGTCTTTG 683
|||| |||| ||||
Sbjct 231 AGACTGCAGTATTTG 245
> Ahg347316 jgi|Araly1|347316|fgenesh1_pg.C_scaffold_5000708
Length=423
Score = 315 bits (170), Expect = 4e-85
Identities = 288/341 (84%), Gaps = 24/341 (7%)
Strand=Plus/Plus
Query 442 CAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTC 500
|||||||||||||||||||||||||||||| || |||| |||||||| ||||||||| ||
Sbjct 76 CAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAATC 134
Query 501 ACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAG 560
|||||| |||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 135 GCCGATGCTGGATACAAGTGATGGTCTTGAGTTTTCTTTTCCTGAAGAAAGTAAAGGTAT 194
Query 561 AAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCA-GATTGAGT 619
|||||| |||||||||||||||||||||| ||||| || |||||| ||||| | ||| ||
Sbjct 195 AAAGGATATGGAATTAGTCTCTTCTCAGGTTAAAGATAAGTCTCAGTCGCAAG-TTGCGT 253
Query 620 TTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGA-GATAGATGAAGACAACA-- 676
||||||| || ||| ||| ||||||||||||||||| | |||||||||| ||||
Sbjct 254 TTTCAGA-GA-ATACGGAA----GTCGTTGAGGACAGTGAAG-TAGATGAAGAAAACAAT 306
Query 677 -GTCTTTGGGGAAAACCTAAGAGAAAAG-GTAGCAATT-T-TTTCGA-AAA-CCTAAGAG 730
|| |||||||||| ||||||| ||||| | | || | | ||| || ||| |||| |||
Sbjct 307 AGTATTTGGGGAAAGCCTAAGA-AAAAGCGCATCAGTACTATTTGGAGAAAACCTATGAG 365
Query 731 AAAGGAAGAGACTACAACAAC--C-TATGAAGCTGAGCTAA 768
|||| ||||| |||||||||| | ||||||||||||||||
Sbjct 366 AAAGAAAGAGCCTACAACAACAACCTATGAAGCTGAGCTAA 406
> Ahg923793 jgi|Araly1|923793|scaffold_105074.1
Length=331
Score = 276 bits (149), Expect = 2e-73
Identities = 189/208 (91%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 562 AAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTT 621
|||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |||
Sbjct 15 AAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGATTTT 74
Query 622 TCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTT 681
||||| ||||||||||||||||||||| |||||||| |||||||||||| | || ||
Sbjct 75 TCAGA---TATAATGAATCTCGTCGTTGACGACAGTGACATAGATGAAGACTGCTGTATT 131
Query 682 TGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAAACCTAAGAGAAAGGAAGAG 740
||||| ||| |||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 132 TGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGAACCTAAGAGAAAGGAAGAG 191
Query 741 ACTACAACAACCTATGAAGCTGAGCTAA 768
||||||||||||| ||||||||||||||
Sbjct 192 ACTACAACAACCTGTGAAGCTGAGCTAA 219
> Ahg336279 jgi|Araly1|336279|fgenesh1_pg.C_scaffold_1002844
Length=582
Score = 233 bits (126), Expect = 1e-60
Identities = 165/182 (91%), Gaps = 9/182 (5%)
Strand=Plus/Plus
Query 446 AATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTCACCG 504
|||||||||||||| ||||||||||| || |||| |||||||| ||||||||||||||||
Sbjct 305 AATTCTCAGAAGTTTCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCG 363
Query 505 ATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAGAAAG 564
||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 364 ATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGAAAGTAAAGGTACAAAG 417
Query 565 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCA 624
||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||
Sbjct 418 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGA-TTTTCA 476
Query 625 GA 626
||
Sbjct 477 GA 478
Score = 141 bits (76), Expect = 7e-33
Identities = 97/107 (91%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 663 AGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAAT-TTTTTCGAAA 721
|||||||||| | || ||||||| ||| |||||||||||||||||| | |||||||| |
Sbjct 476 AGATGAAGACTGCTGTATTTGGGGGAAATCTAAGAGAAAAGGTAGCAGTATTTTTCGAGA 535
Query 722 ACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 ACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 582
> Ahg323054 jgi|Araly1|323054|fgenesh1_pm.C_scaffold_5000598
Length=264
Score = 156 bits (84), Expect = 3e-37
Identities = 99/106 (93%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
|||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTT 534
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT 105
Score = 150 bits (81), Expect = 1e-35
Identities = 104/115 (90%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 587 AGGCTAAAGTTATGTCTCATTCGCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCG 646
||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 116 AGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCG 175
Query 647 TTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAA 701
||||||||||||| |||||||||||| || | ||| ||||||||||||||||
Sbjct 176 TTGAGGACAGTGACATAGATGAAGACTGCA-TATTTTTCGAAAACCTAAGAGAAA 229
Score = 95.3 bits (51), Expect = 6e-19
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 712 TTTTTCGAAAACCTAAGAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAGCTAA 768
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 208 TTTTTCGAAAACCTAAGAGAAAGGAAGAGGCTACAACAACCTATGAAGCTGAACTAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5