BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G07675.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923395 jgi|Araly1|923395|scaffold_104676.1                        217    8e-56


> Ahg923395 jgi|Araly1|923395|scaffold_104676.1
Length=452

 Score =  217 bits (117),  Expect = 8e-56
 Identities = 312/399 (78%), Gaps = 42/399 (11%)
 Strand=Plus/Plus

Query  90   AGTAACAAAGTTGCAAGAACCTAATGATCATCATCATGATGAAGACCAAACTT-TTGATC  148
            |||||||||||||||| ||||||||||||||||| ||||| |||| | || ||  |||||
Sbjct  33   AGTAACAAAGTTGCAAAAACCTAATGATCATCATGATGATCAAGATC-AAGTTCATGATC  91

Query  149  AGTGGTTCGAG-ACTGATGATTTTGCTAATA-TAAGAGATTCATTCCTTTGTTTAAGCGA  206
            | ||||| ||| | ||||||||||||| ||| | | |||| |||||| || ||||| |||
Sbjct  92   ATTGGTTTGAGTA-TGATGATTTTGCTGATATTGA-AGATGCATTCCCTTCTTTAATCGA  149

Query  207  TCTGGTTGATGCA-C-----CAGAGGTGCAGAAACCTAATGATGAAGATCAAAGTTGTGA  260
            || ||||| |||| |     || |  ||| ||||||||||||| ||||||||| || |||
Sbjct  150  TCCGGTTGCTGCACCGGTAACAAACTTGCTGAAACCTAATGATCAAGATCAAATTTATGA  209

Query  261  TCAGTGGATTAATGGGTCTAATGATTTAGCTTCTATAGAAGAAACAGTTTCTTCTTTGAT  320
            ||||||||||||||| |||||||    |   | | | |  |   |   ||| ||  | ||
Sbjct  210  TCAGTGGATTAATGGATCTAATG----A---T-T-T-G--G---C---TTC-TC--TCAT  248

Query  321  CAATCCATCACCGTTTGCTGAAACACCACAATCAGA---ACCT-C--CTGGTCTACGATA  374
            | ||||||||| |||||||||||||| |||||||||    ||| |  |||||||||||||
Sbjct  249  CGATCCATCACTGTTTGCTGAAACACTACAATCAGATCCTCCTACAACTGGTCTACGATA  308

Query  375  CGATACCGGTTGTGCTGACTCGAATCTTGAACAATTCGCTAGAGATTTAGAAGATCAACA  434
            |||||  | || |  ||| |||| | |||||||||  |||||||||||||||||||||||
Sbjct  309  CGATATTGATTCTTATGATTCGATTTTTGAACAATGGGCTAGAGATTTAGAAGATCAACA  368

Query  435  ACAGAGGATGCAACA-AAAATTCCAGAGAGGAC-AACAA  471
            |||||| ||| || | ||||| |||||||  || |||||
Sbjct  369  ACAGAGAATGAAAAAGAAAAT-CCAGAGATCACCAACAA  406



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5