BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G07965.1

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895302 jgi|Araly1|895302|Al_scaffold_0006_3298                    222    1e-57


> Ahg895302 jgi|Araly1|895302|Al_scaffold_0006_3298
Length=516

 Score =  222 bits (120),  Expect = 1e-57
 Identities = 170/194 (88%), Gaps = 4/194 (2%)
 Strand=Plus/Plus

Query  99   TGGGGGACAATTCCACAAGACTCCAAAGGTAAGAGCTCTACCGGTGGAATTGCGTTGTGG  158
            |||| |||  |||||| ||||||| | |||||||||||||| || ||| || || || ||
Sbjct  108  TGGGAGACGTTTCCACGAGACTCCGACGGTAAGAGCTCTACTGGCGGAGTTACGATGCGG  167

Query  159  TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGAAAGGTGGTTAGATTCGGAGTG  218
            |||||||||||||||||||||||||||||||||||||| |||||||||| ||| || || 
Sbjct  168  TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGGAAGGTGGTTAAATTTGGGGTC  227

Query  219  TGGCGACGCAGGAGATTTCACG-GGACTATTGGTTC-CTGGGGGAGGTCGTCTGTGGTCC  276
            |||||||||||||| | ||||| || |||| ||||| | |||||||||||||||||||||
Sbjct  228  TGGCGACGCAGGAGGTCTCACGAGG-CTATCGGTTCAC-GGGGGAGGTCGTCTGTGGTCC  285

Query  277  GGTGAAGCTATGCC  290
            ||||||||||||||
Sbjct  286  GGTGAAGCTATGCC  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15224080011


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5