BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G07965.1 Length=423 Score E Sequences producing significant alignments: (Bits) Value Ahg895302 jgi|Araly1|895302|Al_scaffold_0006_3298 222 1e-57 > Ahg895302 jgi|Araly1|895302|Al_scaffold_0006_3298 Length=516 Score = 222 bits (120), Expect = 1e-57 Identities = 170/194 (88%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 99 TGGGGGACAATTCCACAAGACTCCAAAGGTAAGAGCTCTACCGGTGGAATTGCGTTGTGG 158 |||| ||| |||||| ||||||| | |||||||||||||| || ||| || || || || Sbjct 108 TGGGAGACGTTTCCACGAGACTCCGACGGTAAGAGCTCTACTGGCGGAGTTACGATGCGG 167 Query 159 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGAAAGGTGGTTAGATTCGGAGTG 218 |||||||||||||||||||||||||||||||||||||| |||||||||| ||| || || Sbjct 168 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGGAAGGTGGTTAAATTTGGGGTC 227 Query 219 TGGCGACGCAGGAGATTTCACG-GGACTATTGGTTC-CTGGGGGAGGTCGTCTGTGGTCC 276 |||||||||||||| | ||||| || |||| ||||| | ||||||||||||||||||||| Sbjct 228 TGGCGACGCAGGAGGTCTCACGAGG-CTATCGGTTCAC-GGGGGAGGTCGTCTGTGGTCC 285 Query 277 GGTGAAGCTATGCC 290 |||||||||||||| Sbjct 286 GGTGAAGCTATGCC 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15224080011 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5